Detail information of GWHGAAZE006265


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006367458.14.1168E-119PREDICTED: 3-isopropylmalate dehydratase-like [Solanum tuberosum]
Swissprottr|Q9ZW85|LEUD3_ARATH9E-1073-isopropylmalate dehydratase small subunit 3 (Precursor)
trEMBLtr|M1C8F8|M1C8F8_SOLTU2E-119Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400062070}
TAIR10AT2G43090.12E-79Aconitase/3-isopropylmalate dehydratase protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2219848922200266+
GWHAAZE00000002mRNA2219848922200266+
GWHAAZE00000002exon2219848922198931+
GWHAAZE00000002exon2219993022200266+
GWHAAZE00000002CDS2219848922198931+
GWHAAZE00000002CDS2219993022200266+
Transcript Sequence

Network for GWHGAAZE006265

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00694.20Aconitase_C1431892.20E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01704leuD, IPMI-S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290

Gene Ontology

GO term OntologyName
GO:0016836molecular_functionhydro-lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.580
SRR3591706second leaf22.053
SRR3591707mature leaf28.433
SRR3591708Shoot apex36.797
SRR3591709Stem34.632
SRR3591710White floral bud60.436
SRR3591711White flower45.623
SRR3591712Green floral bud80.113
SRR3591713Yellow flower38.860
SRP173429 SRR8316895Juvenile bud stage 93.874
SRR8316896Juvenile bud stage 119.900
SRR8316897Juvenile bud stage 61.898
SRR8316894Third green stage 50.721
SRR8316900Third green stage 216.164
SRR8316901Third green stage 209.625
SRR8316898Complete white stage 68.688
SRR8316899Complete white stage 201.891
SRR8316903Complete white stage 118.709
SRR8316902Silver flowering stage76.550
SRR8316904Silver flowering stage89.829
SRR8316905Silver flowering stage58.459
SRR8316906Gold flowering stage 151.339
SRR8316907Gold flowering stage 153.721
SRR8316908Gold flowering stage 169.666
SRP132670SRR6706286Control296.269
SRR6706287Light intensity 50%264.294
SRR6706288Light intensity 20%276.167
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1107.662
CNS0095593Slightly white alabastrum(diploid) 2127.710
CNS0095594Slightly white alabastrum(diploid) 394.723
CNS0095595Whole white alabastrum(diploid) 2106.860
CNS0095596Whole white alabastrum(diploid) 3115.130
CNS0095597Whole white alabastrum(diploid) 499.456
CNS0095598Silvery flower (diploied) 1118.435
CNS0095599Silvery flower (diploied) 2108.483
CNS0095600Silvery flower (diploied) 3207.036
CNS0095601Golden flower (diploid) 1113.378
CNS0095602Golden flower (diploid) 2192.964
CNS0095603Golden flower (diploid) 3187.498
CNS0095604Slightly white alabastrum(tetraploid) 1129.230
CNS0095605Slightly white alabastrum(tetraploid) 2109.952
CNS0095606Slightly white alabastrum(tetraploid) 3176.144
CNS0095607Whole white alabastrum(tetraploid) 175.432
CNS0095608Whole white alabastrum(tetraploid) 269.808
CNS0095609Whole white alabastrum(tetraploid) 3175.797
CNS0095610Silvery flower (tetraploid) 1170.981
CNS0095611Silvery flower (tetraploid) 2229.008
CNS0095612Silvery flower (tetraploid) 3194.373
CNS0095613Golden flower (tetraploid) 1154.669
CNS0095614Golden flower (tetraploid) 2189.568
CNS0095615Golden flower (tetraploid) 3181.693
CRA001975CRR073297Stem 1137.663
CRR073298Stem 2163.332
CRR073299Stem 3167.658
CRR073300Leaf 1209.022
CRR073301Leaf 2211.881
CRR073302Leaf 3214.795
CRR073303Juvenile bud 1199.535
CRR073304Juvenile bud 2232.271
CRR073305Juvenile bud 3221.510
CRR073306Third green 1164.345
CRR073307Third green 2124.276
CRR073308Third green 3127.030
CRR073309Second white 1142.798
CRR073310Second white 2110.951
CRR073311Second white 393.456
CRR073312Silver flowering 1109.399
CRR073313Silver flowering 2138.862
CRR073314Silver flowering 3122.744
CRR073315Gold flowering 1105.651
CRR073316Gold flowering 2134.714
CRR073317Gold flowering 3117.252
CRR073318Tawny withering 1143.115
CRR073319Tawny withering 2130.045
CRR073320Tawny withering 3101.573