Gene detail

Detail information of GWHGAAZE006286

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613999.1	2.7086E-131	PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3-like isoform X2 [Nicotiana tomentosiformis]
trEMBL	tr\|M5WVD2\|M5WVD2_PRUPE	8E-131	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU361215}
TAIR10	AT4G17510.1	9E-93	ubiquitin C-terminal hydrolase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22604481	22614206	+
GWHAAZE00000002	mRNA	22604481	22614206	+
GWHAAZE00000002	exon	22604481	22604546	+
GWHAAZE00000002	exon	22605012	22605143	+
GWHAAZE00000002	exon	22606855	22606960	+
GWHAAZE00000002	exon	22610825	22610883	+
GWHAAZE00000002	exon	22610998	22611072	+
GWHAAZE00000002	exon	22613533	22613581	+
GWHAAZE00000002	exon	22614040	22614206	+
GWHAAZE00000002	CDS	22604481	22604546	+
GWHAAZE00000002	CDS	22605012	22605143	+
GWHAAZE00000002	CDS	22606855	22606960	+
GWHAAZE00000002	CDS	22610825	22610883	+
GWHAAZE00000002	CDS	22610998	22611072	+
GWHAAZE00000002	CDS	22613533	22613581	+
GWHAAZE00000002	CDS	22614040	22614206	+

Transcript Sequence
>GWHTAAZE006294 ATGGCAGAAAGTGCTTCTGCTAAGAGGTGGCTTCCTCTTGAAGCTAACCCTGATGTTATGAACCAGTTCCTTTGGGGCCTGGGTGTTCCAGTGACAGAGGCAGAGTGCTGTGACGTGTATGGATTAGATGATGAACTATTGGAAATGGTTCCCAAGCCAGTACTTGCTGTTCTATTTCTCTATCCCCTCACGGCTGAGGACCCTATCAAGGGAGTTTACTTCATGAAACAAACTGTGGGAAATGCCTGTGGAACAATTGGGCTTCTTCATGCCATTGGGAATGTCACTTCAGAGATAAAACTTCAGGAAGGCTCGTTCTTGGACAAGTTCTACAAGTCCACTGCAAGCATGGATCCACAGGAGCGTGCAACTTACCTGGAAAATGATAGAGAAATGGAAGTTGCTCATTCAGTAGCGGCTACTGCTGGTGAGACTGAGGCTTCAGATAACGTGGACACTCACTTTATATGCTTCGCATGTGTGGACGGGCAACTTTTCGAGCTTGATGGAAGGAAGTCGGGGCCGATATCGCACGGACCATCTTCACCAAACAGCTTATTAAAGGATGCAGCGAAAGTAATACAGGGTATGATCCAGAAAAATCCAAATTCGATGAACTTCAATGTAATTGCTATTTCAAAGACGGCAGCATAG

Network for GWHGAAZE006286

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01088.22	Peptidase_C12	10	198	2.30E-55

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UCH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0004843	molecular_function	thiol-dependent ubiquitin-specific protease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.449
	SRR3591706	second leaf	33.301
	SRR3591707	mature leaf	39.092
	SRR3591708	Shoot apex	43.255
	SRR3591709	Stem	52.413
	SRR3591710	White floral bud	59.361
	SRR3591711	White flower	100.583
	SRR3591712	Green floral bud	68.709
	SRR3591713	Yellow flower	86.263
SRP173429	SRR8316895	Juvenile bud stage	43.150
	SRR8316896	Juvenile bud stage	65.126
	SRR8316897	Juvenile bud stage	27.907
	SRR8316894	Third green stage	23.153
	SRR8316900	Third green stage	55.696
	SRR8316901	Third green stage	50.296
	SRR8316898	Complete white stage	23.539
	SRR8316899	Complete white stage	61.176
	SRR8316903	Complete white stage	29.230
	SRR8316902	Silver flowering stage	35.352
	SRR8316904	Silver flowering stage	38.867
	SRR8316905	Silver flowering stage	18.577
	SRR8316906	Gold flowering stage	68.398
	SRR8316907	Gold flowering stage	66.275
	SRR8316908	Gold flowering stage	72.013
SRP132670	SRR6706286	Control	51.936
	SRR6706287	Light intensity 50%	50.073
	SRR6706288	Light intensity 20%	53.667
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.393
	CNS0095593	Slightly white alabastrum(diploid) 2	49.043
	CNS0095594	Slightly white alabastrum(diploid) 3	68.174
	CNS0095595	Whole white alabastrum(diploid) 2	44.983
	CNS0095596	Whole white alabastrum(diploid) 3	44.276
	CNS0095597	Whole white alabastrum(diploid) 4	41.352
	CNS0095598	Silvery flower (diploied) 1	43.307
	CNS0095599	Silvery flower (diploied) 2	42.922
	CNS0095600	Silvery flower (diploied) 3	59.284
	CNS0095601	Golden flower (diploid) 1	46.483
	CNS0095602	Golden flower (diploid) 2	53.578
	CNS0095603	Golden flower (diploid) 3	51.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.590
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.672
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.320
	CNS0095610	Silvery flower (tetraploid) 1	70.824
	CNS0095611	Silvery flower (tetraploid) 2	48.727
	CNS0095612	Silvery flower (tetraploid) 3	53.393
	CNS0095613	Golden flower (tetraploid) 1	59.561
	CNS0095614	Golden flower (tetraploid) 2	57.717
	CNS0095615	Golden flower (tetraploid) 3	63.622
CRA001975	CRR073297	Stem 1	63.474
	CRR073298	Stem 2	62.913
	CRR073299	Stem 3	71.485
	CRR073300	Leaf 1	65.371
	CRR073301	Leaf 2	66.326
	CRR073302	Leaf 3	67.810
	CRR073303	Juvenile bud 1	70.132
	CRR073304	Juvenile bud 2	44.854
	CRR073305	Juvenile bud 3	44.338
	CRR073306	Third green 1	37.075
	CRR073307	Third green 2	39.476
	CRR073308	Third green 3	37.091
	CRR073309	Second white 1	29.478
	CRR073310	Second white 2	56.300
	CRR073311	Second white 3	29.801
	CRR073312	Silver flowering 1	33.179
	CRR073313	Silver flowering 2	29.834
	CRR073314	Silver flowering 3	32.886
	CRR073315	Gold flowering 1	45.822
	CRR073316	Gold flowering 2	57.235
	CRR073317	Gold flowering 3	23.394
	CRR073318	Tawny withering 1	65.214
	CRR073319	Tawny withering 2	77.097
	CRR073320	Tawny withering 3	70.635