Detail information of GWHGAAZE006288


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006359233.11.1229E-167PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Solanum tuberosum]
Swissprottr|Q39659|MFPA_CUCSA1E-243-hydroxyacyl-CoA dehydrogenase
trEMBLtr|M1CHB1|M1CHB1_SOLTU4E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400067466}
TAIR10AT4G16800.13E-106ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2262197422627731-
GWHAAZE00000002mRNA2262197422627731-
GWHAAZE00000002exon2262197422622150-
GWHAAZE00000002exon2262309222623168-
GWHAAZE00000002exon2262324522623348-
GWHAAZE00000002exon2262380222623871-
GWHAAZE00000002exon2262394922624039-
GWHAAZE00000002exon2262522922625303-
GWHAAZE00000002exon2262599422626163-
GWHAAZE00000002exon2262752422627731-
GWHAAZE00000002CDS2262752422627731-
GWHAAZE00000002CDS2262599422626163-
GWHAAZE00000002CDS2262522922625303-
GWHAAZE00000002CDS2262394922624039-
GWHAAZE00000002CDS2262380222623871-
GWHAAZE00000002CDS2262324522623348-
GWHAAZE00000002CDS2262309222623168-
GWHAAZE00000002CDS2262197422622150-
Transcript Sequence

Network for GWHGAAZE006288

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00378.21ECH_1683207.20E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05607AUH Metabolic pathways map01100
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.228
SRR3591706second leaf11.341
SRR3591707mature leaf7.331
SRR3591708Shoot apex12.790
SRR3591709Stem13.604
SRR3591710White floral bud9.618
SRR3591711White flower13.497
SRR3591712Green floral bud11.650
SRR3591713Yellow flower9.394
SRP173429 SRR8316895Juvenile bud stage 10.428
SRR8316896Juvenile bud stage 14.602
SRR8316897Juvenile bud stage 6.873
SRR8316894Third green stage 6.009
SRR8316900Third green stage 18.753
SRR8316901Third green stage 16.736
SRR8316898Complete white stage 7.724
SRR8316899Complete white stage 21.375
SRR8316903Complete white stage 8.915
SRR8316902Silver flowering stage6.700
SRR8316904Silver flowering stage7.377
SRR8316905Silver flowering stage3.314
SRR8316906Gold flowering stage 12.707
SRR8316907Gold flowering stage 11.575
SRR8316908Gold flowering stage 12.661
SRP132670SRR6706286Control16.889
SRR6706287Light intensity 50%16.892
SRR6706288Light intensity 20%20.726
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.695
CNS0095593Slightly white alabastrum(diploid) 212.787
CNS0095594Slightly white alabastrum(diploid) 38.839
CNS0095595Whole white alabastrum(diploid) 29.477
CNS0095596Whole white alabastrum(diploid) 39.767
CNS0095597Whole white alabastrum(diploid) 49.504
CNS0095598Silvery flower (diploied) 112.722
CNS0095599Silvery flower (diploied) 28.753
CNS0095600Silvery flower (diploied) 38.142
CNS0095601Golden flower (diploid) 18.664
CNS0095602Golden flower (diploid) 210.893
CNS0095603Golden flower (diploid) 37.722
CNS0095604Slightly white alabastrum(tetraploid) 19.917
CNS0095605Slightly white alabastrum(tetraploid) 210.333
CNS0095606Slightly white alabastrum(tetraploid) 317.487
CNS0095607Whole white alabastrum(tetraploid) 15.381
CNS0095608Whole white alabastrum(tetraploid) 25.051
CNS0095609Whole white alabastrum(tetraploid) 314.111
CNS0095610Silvery flower (tetraploid) 111.378
CNS0095611Silvery flower (tetraploid) 215.119
CNS0095612Silvery flower (tetraploid) 38.450
CNS0095613Golden flower (tetraploid) 17.540
CNS0095614Golden flower (tetraploid) 29.886
CNS0095615Golden flower (tetraploid) 34.640
CRA001975CRR073297Stem 114.041
CRR073298Stem 211.009
CRR073299Stem 39.095
CRR073300Leaf 114.372
CRR073301Leaf 211.782
CRR073302Leaf 38.509
CRR073303Juvenile bud 16.982
CRR073304Juvenile bud 25.760
CRR073305Juvenile bud 39.963
CRR073306Third green 12.444
CRR073307Third green 21.895
CRR073308Third green 33.010
CRR073309Second white 15.021
CRR073310Second white 23.344
CRR073311Second white 32.305
CRR073312Silver flowering 11.426
CRR073313Silver flowering 21.533
CRR073314Silver flowering 31.838
CRR073315Gold flowering 17.052
CRR073316Gold flowering 25.919
CRR073317Gold flowering 33.201
CRR073318Tawny withering 16.318
CRR073319Tawny withering 25.191
CRR073320Tawny withering 37.893