Detail information of GWHGAAZE006292


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW71910.11.3391E-120hypothetical protein EUGRSUZ_E00370 [Eucalyptus grandis]
Swissprottr|Q05737|YPTM2_MAIZE3E-114GTP-binding protein YPTM2
trEMBLtr|A0A059C1X4|A0A059C1X4_EUCGR5E-121Uncharacterized protein {ECO:0000313|EMBL:KCW71910.1}
TAIR10AT4G17530.11E-89RAB GTPase homolog 1C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2269527322697541-
GWHAAZE00000002mRNA2269527322697541-
GWHAAZE00000002exon2269749422697541-
GWHAAZE00000002exon2269736022697407-
GWHAAZE00000002exon2269702622697097-
GWHAAZE00000002exon2269655822696713-
GWHAAZE00000002exon2269630322696406-
GWHAAZE00000002exon2269527322695369-
GWHAAZE00000002CDS2269749422697541-
GWHAAZE00000002CDS2269736022697407-
GWHAAZE00000002CDS2269702622697097-
GWHAAZE00000002CDS2269655822696713-
GWHAAZE00000002CDS2269630322696406-
GWHAAZE00000002CDS2269527322695369-
Transcript Sequence

Network for GWHGAAZE006292

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras21411.50E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07874RAB1A Autophagy - animal map04140

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf185.969
SRR3591706second leaf55.494
SRR3591707mature leaf35.215
SRR3591708Shoot apex74.601
SRR3591709Stem137.411
SRR3591710White floral bud163.618
SRR3591711White flower193.916
SRR3591712Green floral bud173.860
SRR3591713Yellow flower245.887
SRP173429 SRR8316895Juvenile bud stage 141.942
SRR8316896Juvenile bud stage 146.663
SRR8316897Juvenile bud stage 176.205
SRR8316894Third green stage 48.254
SRR8316900Third green stage 125.389
SRR8316901Third green stage 160.757
SRR8316898Complete white stage 50.510
SRR8316899Complete white stage 197.295
SRR8316903Complete white stage 79.332
SRR8316902Silver flowering stage74.558
SRR8316904Silver flowering stage70.122
SRR8316905Silver flowering stage34.306
SRR8316906Gold flowering stage 156.899
SRR8316907Gold flowering stage 156.467
SRR8316908Gold flowering stage 172.278
SRP132670SRR6706286Control63.323
SRR6706287Light intensity 50%76.919
SRR6706288Light intensity 20%80.001
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1168.317
CNS0095593Slightly white alabastrum(diploid) 2173.374
CNS0095594Slightly white alabastrum(diploid) 3171.267
CNS0095595Whole white alabastrum(diploid) 2167.076
CNS0095596Whole white alabastrum(diploid) 3105.558
CNS0095597Whole white alabastrum(diploid) 4119.708
CNS0095598Silvery flower (diploied) 1103.134
CNS0095599Silvery flower (diploied) 2190.141
CNS0095600Silvery flower (diploied) 3133.868
CNS0095601Golden flower (diploid) 1165.587
CNS0095602Golden flower (diploid) 2158.985
CNS0095603Golden flower (diploid) 3161.963
CNS0095604Slightly white alabastrum(tetraploid) 1135.702
CNS0095605Slightly white alabastrum(tetraploid) 2120.895
CNS0095606Slightly white alabastrum(tetraploid) 3105.865
CNS0095607Whole white alabastrum(tetraploid) 1111.995
CNS0095608Whole white alabastrum(tetraploid) 2110.745
CNS0095609Whole white alabastrum(tetraploid) 3119.192
CNS0095610Silvery flower (tetraploid) 1103.682
CNS0095611Silvery flower (tetraploid) 286.845
CNS0095612Silvery flower (tetraploid) 3140.919
CNS0095613Golden flower (tetraploid) 1125.567
CNS0095614Golden flower (tetraploid) 299.618
CNS0095615Golden flower (tetraploid) 3140.729
CRA001975CRR073297Stem 179.069
CRR073298Stem 276.682
CRR073299Stem 357.844
CRR073300Leaf 1113.459
CRR073301Leaf 2115.769
CRR073302Leaf 394.429
CRR073303Juvenile bud 1103.412
CRR073304Juvenile bud 2118.623
CRR073305Juvenile bud 383.424
CRR073306Third green 1102.888
CRR073307Third green 2109.498
CRR073308Third green 3102.688
CRR073309Second white 179.411
CRR073310Second white 2105.989
CRR073311Second white 380.191
CRR073312Silver flowering 1125.756
CRR073313Silver flowering 2141.819
CRR073314Silver flowering 3130.997
CRR073315Gold flowering 116.095
CRR073316Gold flowering 227.551
CRR073317Gold flowering 321.339
CRR073318Tawny withering 187.769
CRR073319Tawny withering 2191.165
CRR073320Tawny withering 3123.194