Detail information of GWHGAAZE006308


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010262523.10PREDICTED: protein IWS1 homolog [Nelumbo nucifera]
trEMBLtr|M5WBN4|M5WBN4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ11167.1}
TAIR10AT1G32130.15E-122Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2294945322954136-
GWHAAZE00000002mRNA2294945322954136-
GWHAAZE00000002exon2294945322949551-
GWHAAZE00000002exon2295014222950295-
GWHAAZE00000002exon2295037622950441-
GWHAAZE00000002exon2295052822950619-
GWHAAZE00000002exon2295150422951581-
GWHAAZE00000002exon2295171522951777-
GWHAAZE00000002exon2295189022952019-
GWHAAZE00000002exon2295210922952329-
GWHAAZE00000002exon2295253922952658-
GWHAAZE00000002exon2295348022953972-
GWHAAZE00000002exon2295412022954136-
GWHAAZE00000002CDS2295412022954136-
GWHAAZE00000002CDS2295348022953972-
GWHAAZE00000002CDS2295253922952658-
GWHAAZE00000002CDS2295210922952329-
GWHAAZE00000002CDS2295189022952019-
GWHAAZE00000002CDS2295171522951777-
GWHAAZE00000002CDS2295150422951581-
GWHAAZE00000002CDS2295052822950619-
GWHAAZE00000002CDS2295037622950441-
GWHAAZE00000002CDS2295014222950295-
GWHAAZE00000002CDS2294945322949551-
Transcript Sequence

Network for GWHGAAZE006308

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med263243781.70E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf76.329
SRR3591706second leaf43.309
SRR3591707mature leaf44.839
SRR3591708Shoot apex60.653
SRR3591709Stem80.189
SRR3591710White floral bud88.202
SRR3591711White flower91.726
SRR3591712Green floral bud70.784
SRR3591713Yellow flower93.338
SRP173429 SRR8316895Juvenile bud stage 44.597
SRR8316896Juvenile bud stage 64.734
SRR8316897Juvenile bud stage 22.739
SRR8316894Third green stage 24.463
SRR8316900Third green stage 69.777
SRR8316901Third green stage 67.823
SRR8316898Complete white stage 30.347
SRR8316899Complete white stage 99.885
SRR8316903Complete white stage 63.691
SRR8316902Silver flowering stage37.487
SRR8316904Silver flowering stage48.951
SRR8316905Silver flowering stage24.209
SRR8316906Gold flowering stage 77.802
SRR8316907Gold flowering stage 90.530
SRR8316908Gold flowering stage 75.992
SRP132670SRR6706286Control93.598
SRR6706287Light intensity 50%90.205
SRR6706288Light intensity 20%93.747
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.935
CNS0095593Slightly white alabastrum(diploid) 250.993
CNS0095594Slightly white alabastrum(diploid) 345.078
CNS0095595Whole white alabastrum(diploid) 245.666
CNS0095596Whole white alabastrum(diploid) 344.955
CNS0095597Whole white alabastrum(diploid) 448.416
CNS0095598Silvery flower (diploied) 171.076
CNS0095599Silvery flower (diploied) 254.452
CNS0095600Silvery flower (diploied) 375.748
CNS0095601Golden flower (diploid) 157.676
CNS0095602Golden flower (diploid) 273.733
CNS0095603Golden flower (diploid) 372.729
CNS0095604Slightly white alabastrum(tetraploid) 149.092
CNS0095605Slightly white alabastrum(tetraploid) 242.328
CNS0095606Slightly white alabastrum(tetraploid) 365.939
CNS0095607Whole white alabastrum(tetraploid) 139.228
CNS0095608Whole white alabastrum(tetraploid) 241.011
CNS0095609Whole white alabastrum(tetraploid) 358.462
CNS0095610Silvery flower (tetraploid) 184.464
CNS0095611Silvery flower (tetraploid) 269.663
CNS0095612Silvery flower (tetraploid) 362.170
CNS0095613Golden flower (tetraploid) 157.771
CNS0095614Golden flower (tetraploid) 278.742
CNS0095615Golden flower (tetraploid) 359.131
CRA001975CRR073297Stem 185.014
CRR073298Stem 279.563
CRR073299Stem 381.620
CRR073300Leaf 181.774
CRR073301Leaf 280.115
CRR073302Leaf 358.924
CRR073303Juvenile bud 169.947
CRR073304Juvenile bud 260.667
CRR073305Juvenile bud 395.253
CRR073306Third green 153.618
CRR073307Third green 245.333
CRR073308Third green 354.794
CRR073309Second white 147.295
CRR073310Second white 249.860
CRR073311Second white 348.873
CRR073312Silver flowering 150.622
CRR073313Silver flowering 248.247
CRR073314Silver flowering 345.245
CRR073315Gold flowering 137.578
CRR073316Gold flowering 261.327
CRR073317Gold flowering 338.338
CRR073318Tawny withering 175.447
CRR073319Tawny withering 266.996
CRR073320Tawny withering 370.894