Gene detail

Detail information of GWHGAAZE006313

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009607206.1	PREDICTED: cellulose synthase-like protein D3 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9M9M4\|CSLD3_ARATH	Cellulose synthase-like protein D3
trEMBL	tr\|M0ZQX5\|M0ZQX5_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006160}
TAIR10	AT3G03050.1	cellulose synthase-like D3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23013146	23017579	-
GWHAAZE00000002	mRNA	23013146	23017579	-
GWHAAZE00000002	exon	23013146	23014879	-
GWHAAZE00000002	exon	23015136	23015946	-
GWHAAZE00000002	exon	23016780	23017579	-
GWHAAZE00000002	CDS	23016780	23017579	-
GWHAAZE00000002	CDS	23015136	23015946	-
GWHAAZE00000002	CDS	23013146	23014879	-

Transcript Sequence
>GWHTAAZE006321 ATGGCTGGAAGATCATTCAAAGCAGGTCAATCTGATGACTATTCCCCCAGAGGCTCTAGAAAGTACATTGATAGTGAAAATGGCACTGGCGAATACGTTGTGCACGTACCTGAAACACCCGATAATCAGCCAATGGATCGTTTAATTTCACAGAGAGTTGAAGAGCAATATGTAACAAACTCAATGTTTACCGGTGGCCACAACAGTGCTACTCGTGCCCATTTGATGGACAAGGTGATCGAGTCTGGAAAGAGTCATCCACAGATGGCTGGTGCAAAAGGGTCTATGTGTTCTATACCGGGTTGTGATGGGAATGTAATGAGCGATGAGAGAGGTCAAGATATTATCCCGTGTGTGTGCGGTTTCAAGATCTGTAGGGATTGTTTTATGGATGATCTTAAAGGCGGTGACGGTATTTGTCTGGGTTGTAAAGAGCCGTATAAGGAAATGGATTTCGATGAGAGAGTAGAGGAGAATGTACAGCCTCTTCCTCTACCCAATGTTGAGATGTCGAAAATGGATAAGAGGTCATCATCAAGGATGGGGAAGCAGATTTCTATGATGAAATCAACCAAGTCCAAGTCAGTGATAGTTAGAAGCCAAACGGGAGATTTTGATCATAACCGCTGGTTGTTTGATACAAGTGGGACTTATGGGTATGGAAATGCTATATGGCCTAAGGATGGGGGACTTGGGAATAGTGAAGATGGTGGTAGTGACGCTTTGGAACTTCTTAACAAGCCGTGGAAGCCTCTTACTCGCAAGTTGAAGATACCTGCTGCAATTATTAGCCCGTATCGACTCCTAATTTTTGTACGAATAGTTGTTCTCGGATTATTCCTTCATTGGAGGATCAGTCACCCAAACAATGACGCTATATGGCTCTGGTATATGTCAATCATTTGTGAGATTTGGTTCGCATTCTCTTGGCTACTCGACCAGCTTCCCAAATTCTGCCCCGTTAACCGTTCTACTGACCTCGATGTGCTCAAAGAAAAATTTGAAACTCCCGCTCCCCACAATCCCACTGGAAAATCAGATCTTCCGGGAGTAGACGTATTTGTTTCAACTGCGGATCCTGAGAAAGAGCCACCACTTGTTACTGCAAACACCATTCTCTCTATTTTAGCCGCCGATTACCCCATTGAAAAGCTCTCTTGTTATGTCTCTGATGATGGGGGTGCCCTTCTATCTTTTGAGGCCATGGCCGAAGCAGCAAGCTTTGCCAATCTGTGGGTGCCATTTTGCCGAAAACACGATATTGAGCCGAGGAATCCTGAATCCTATTTCAATTTGAAGAGAGACCCTTTTAAGAACAAGGTTAAATCGGATTTCGTTAAGGATCGTAGACGGGTAAAGCGTGAATATGATGAGTTTAAGGTTCGGATCAACGGTCTTCCTGACTCGATTCGTCGTCGTTCTGATGCTTATAATGCTCGAGAAGAAATAAGGGCTATGAAGCGTAGGAGAGAGCATGCTGGGAATGATGAATATTCGGAAAGTGTGAAGATATCTAAAGCCACATGGATGGCTGATGGGACCCACTGGCCCGGAACTTGGATGGTTTCGGCTCCTCAGCACTCTAAGGGTGATCATGCAGGAATCATACAGGTGATGTTGAAACCTCCAAGTGATGAACCACTATATGGCACAGCCTCGGATTCAGATCTGGCCAAAATTGATTTGAAAGAAGTTGACATTCGTCTTCCTATGCTGGTCTATGTTTCTCGGGAAAAGCGCCCCGGATATGACCACAACAAGAAAGCCGGTGCAATGAACGCTTTAGTTCGAGCCTCGGCCATAATGTCCAACGGTCCCTTCATGCTCAATCTTGACTGCGACCATTACATTTACAACTCTAAGGCAATAAGAGAAGGCATGTGCTTTATGATGGACCGTGGTGGGGACCGCATTTGCTATGTCCAGTTCCCTCAACGGTTTGAAGGGATTGACCCGTCCGACCGCTATGCAAATCACAACACTGTTTTCTTTGATGTCAATATGCGGGCCCTTGATGGGCTCCAAGGTCCGGTTTACGTGGGTACAGGTTGCCTCTTTCGAAGGATCGCACTTTATGGTTTTGACCCTCCCCAGTCGAAGGAGCACAAGCCTGGTTGCTGCAGTTGTTGCTTTGGCCGTAATAAAAGAAGTTCCACTGTTGCTTCGGCCCCAGAGGATGATGAGGGAATGGATGTATCTCTCTTTCCTAAAAAGTTCGGTAACTCGAGTTACCTCGTTGATTCGATCCAGGACGCGGAATTCCAGGGCCGCCCTCTCGCAGATCACCCTGCTGTGAAGAACGGGCGCCCCCCTGGCACCCTCACCATTCCTCGTGAGCTTCTTGATGCATCCACTGTAGCCGAGGCAATAAGTGTGATCTCGTGTTGGTACGAGGATAAAACTGAATGGGGTAATCGGGTTGGATGGATATACGGATCGGTTACCGAAGATGTGGTGACGGGTTATCGGATGCACAATCGAGGGTGGAGATCAATATATTGTGTGACAAAGAGGGATGCCTTTCGTGGGACCGCCCCAATTAACCTGACCGATAGGCTCCACCAGGTCCTCCGGTGGGCCACTGGGTCGGTTGAAATATTTTTCTCGCGCAACAATGCTCTCCTAGCAAGCCCTAAAATGAAATTTCTACAAAGGATTGCGTATCTTAACGTCGGTATATACCCCTTCACCTCCATTTTCCTCATTATATACTGCTTCCTTCCAGCTCTTTCCCTATTTTCGGGTCAATTCATTGTTCAAACCCTTAACGTCACCTTCCTAGTGTACCTTCTCCTCATAACACTAACGCTATGCATGCTTGCGGTTCTCGAGATAAAATGGTCTGGCATTGCCCTAGAGGAGTGGTGGAGAAACGAGCAATTTTGGTTAATCGGAGGTACGAGCGCCCACCTTGCTGCCGTACTCCAAGGCCTACTCAAAGTTGTTGCTGGTATTGAAATTTCCTTCACTTTAACGTCAAAATCTGCCAATGATGAAAATGATGATGATTTTATTGATCTTTATATCATCAAATGGACATCTCTAATGATACCTCCAATCACGATCATGTTGACAAACTTGATTGCAATAGCAGTCGGTTTTAGCCGTACGATCTATAGCACTATACCGCAGTGGAGCCGGTTGTTGGGTGGGGTTTTCTTCAGCTTTTGGGTGTTGGCTCATCTTTACCCCTTTGCGAAAGGATTAATGGGAAGGCGGGGTAGAACGCCCACAATTGTGTTTGTTTGGTCGGGACTTATTGCAATTACCATATCCCTACTCTGGGTAGCGATTGATCCTCCGTCGGGGAGTAGTGGGATCGGGGGGTCATTTCAGTTCCCATGA

Network for GWHGAAZE006313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0285

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.7	zf-RING_4	99	148	1.60E-13
PF03552.15	Cellulose_synt	351	721	5.30E-182
PF03552.15	Cellulose_synt	727	1102	1.40E-194

Protein Sequence

>GWHPAAZE006317
MAGRSFKAGQSDDYSPRGSRKYIDSENGTGEYVVHVPETPDNQPMDRLISQRVEEQYVTNSMFTGGHNSATRAHLMDKVIESGKSHPQMAGAKGSMCSIPGCDGNVMSDERGQDIIPCVCGFKICRDCFMDDLKGGDGICLGCKEPYKEMDFDERVEENVQPLPLPNVEMSKMDKRSSSRMGKQISMMKSTKSKSVIVRSQTGDFDHNRWLFDTSGTYGYGNAIWPKDGGLGNSEDGGSDALELLNKPWKPLTRKLKIPAAIISPYRLLIFVRIVVLGLFLHWRISHPNNDAIWLWYMSIICEIWFAFSWLLDQLPKFCPVNRSTDLDVLKEKFETPAPHNPTGKSDLPGVDVFVSTADPEKEPPLVTANTILSILAADYPIEKLSCYVSDDGGALLSFEAMAEAASFANLWVPFCRKHDIEPRNPESYFNLKRDPFKNKVKSDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIRAMKRRREHAGNDEYSESVKISKATWMADGTHWPGTWMVSAPQHSKGDHAGIIQVMLKPPSDEPLYGTASDSDLAKIDLKEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFMLNLDCDHYIYNSKAIREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPQSKEHKPGCCSCCFGRNKRSSTVASAPEDDEGMDVSLFPKKFGNSSYLVDSIQDAEFQGRPLADHPAVKNGRPPGTLTIPRELLDASTVAEAISVISCWYEDKTEWGNRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKFLQRIAYLNVGIYPFTSIFLIIYCFLPALSLFSGQFIVQTLNVTFLVYLLLITLTLCMLAVLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSANDENDDDFIDLYIIKWTSLMIPPITIMLTNLIAIAVGFSRTIYSTIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAIDPPSGSSGIGGSFQFP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030244	biological_process	cellulose biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016760	molecular_function	cellulose synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.418
	SRR3591706	second leaf	2.152
	SRR3591707	mature leaf	1.665
	SRR3591708	Shoot apex	6.295
	SRR3591709	Stem	23.879
	SRR3591710	White floral bud	4.597
	SRR3591711	White flower	7.284
	SRR3591712	Green floral bud	4.305
	SRR3591713	Yellow flower	6.419
SRP173429	SRR8316895	Juvenile bud stage	59.419
	SRR8316896	Juvenile bud stage	57.240
	SRR8316897	Juvenile bud stage	47.396
	SRR8316894	Third green stage	4.692
	SRR8316900	Third green stage	7.587
	SRR8316901	Third green stage	20.494
	SRR8316898	Complete white stage	0.494
	SRR8316899	Complete white stage	16.945
	SRR8316903	Complete white stage	1.052
	SRR8316902	Silver flowering stage	3.775
	SRR8316904	Silver flowering stage	2.518
	SRR8316905	Silver flowering stage	0.825
	SRR8316906	Gold flowering stage	6.146
	SRR8316907	Gold flowering stage	11.319
	SRR8316908	Gold flowering stage	3.896
SRP132670	SRR6706286	Control	2.898
	SRR6706287	Light intensity 50%	2.795
	SRR6706288	Light intensity 20%	3.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.258
	CNS0095593	Slightly white alabastrum(diploid) 2	22.949
	CNS0095594	Slightly white alabastrum(diploid) 3	20.094
	CNS0095595	Whole white alabastrum(diploid) 2	22.940
	CNS0095596	Whole white alabastrum(diploid) 3	3.060
	CNS0095597	Whole white alabastrum(diploid) 4	11.910
	CNS0095598	Silvery flower (diploied) 1	60.716
	CNS0095599	Silvery flower (diploied) 2	67.798
	CNS0095600	Silvery flower (diploied) 3	31.719
	CNS0095601	Golden flower (diploid) 1	35.852
	CNS0095602	Golden flower (diploid) 2	64.355
	CNS0095603	Golden flower (diploid) 3	59.730
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.273
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.967
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.543
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.492
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.240
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.762
	CNS0095610	Silvery flower (tetraploid) 1	11.024
	CNS0095611	Silvery flower (tetraploid) 2	7.721
	CNS0095612	Silvery flower (tetraploid) 3	8.850
	CNS0095613	Golden flower (tetraploid) 1	5.375
	CNS0095614	Golden flower (tetraploid) 2	11.087
	CNS0095615	Golden flower (tetraploid) 3	4.279
CRA001975	CRR073297	Stem 1	17.089
	CRR073298	Stem 2	19.587
	CRR073299	Stem 3	19.877
	CRR073300	Leaf 1	17.042
	CRR073301	Leaf 2	45.544
	CRR073302	Leaf 3	8.192
	CRR073303	Juvenile bud 1	10.881
	CRR073304	Juvenile bud 2	14.455
	CRR073305	Juvenile bud 3	30.313
	CRR073306	Third green 1	11.881
	CRR073307	Third green 2	6.279
	CRR073308	Third green 3	8.610
	CRR073309	Second white 1	9.295
	CRR073310	Second white 2	9.987
	CRR073311	Second white 3	10.336
	CRR073312	Silver flowering 1	22.278
	CRR073313	Silver flowering 2	20.897
	CRR073314	Silver flowering 3	19.563
	CRR073315	Gold flowering 1	6.319
	CRR073316	Gold flowering 2	15.831
	CRR073317	Gold flowering 3	8.971
	CRR073318	Tawny withering 1	14.665
	CRR073319	Tawny withering 2	34.622
	CRR073320	Tawny withering 3	16.249