Detail information of GWHGAAZE006320


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007040696.11.2555E-133Shikimate kinase-like protein isoform 2 [Theobroma cacao]
Swissprottr|O82290|SKL2_ARATH3E-111Probable inactive shikimate kinase like 2, chloroplastic (Precursor)
trEMBLtr|A0A061G7V2|A0A061G7V2_THECC5E-134Shikimate kinase-like protein isoform 2 {ECO:0000313|EMBL:EOY25197.1}
TAIR10AT2G35500.13E-84shikimate kinase like 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2318811423193453-
GWHAAZE00000002mRNA2318811423193453-
GWHAAZE00000002exon2318811423188322-
GWHAAZE00000002exon2318997723190092-
GWHAAZE00000002exon2319020823190274-
GWHAAZE00000002exon2319133023191408-
GWHAAZE00000002exon2319160223191687-
GWHAAZE00000002exon2319243323192494-
GWHAAZE00000002exon2319295623193150-
GWHAAZE00000002exon2319323323193453-
GWHAAZE00000002CDS2319323323193453-
GWHAAZE00000002CDS2319295623193150-
GWHAAZE00000002CDS2319243323192494-
GWHAAZE00000002CDS2319160223191687-
GWHAAZE00000002CDS2319133023191408-
GWHAAZE00000002CDS2319020823190274-
GWHAAZE00000002CDS2318997723190092-
GWHAAZE00000002CDS2318811423188322-
Transcript Sequence

Network for GWHGAAZE006320

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04969.17CS16870.00055
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.993
SRR3591706second leaf52.508
SRR3591707mature leaf30.495
SRR3591708Shoot apex45.215
SRR3591709Stem18.961
SRR3591710White floral bud17.957
SRR3591711White flower16.365
SRR3591712Green floral bud26.441
SRR3591713Yellow flower19.417
SRP173429 SRR8316895Juvenile bud stage 22.285
SRR8316896Juvenile bud stage 26.027
SRR8316897Juvenile bud stage 15.424
SRR8316894Third green stage 9.474
SRR8316900Third green stage 33.495
SRR8316901Third green stage 30.198
SRR8316898Complete white stage 6.492
SRR8316899Complete white stage 22.554
SRR8316903Complete white stage 10.069
SRR8316902Silver flowering stage9.306
SRR8316904Silver flowering stage10.341
SRR8316905Silver flowering stage6.484
SRR8316906Gold flowering stage 16.094
SRR8316907Gold flowering stage 19.866
SRR8316908Gold flowering stage 20.343
SRP132670SRR6706286Control29.096
SRR6706287Light intensity 50%25.997
SRR6706288Light intensity 20%29.868
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.400
CNS0095593Slightly white alabastrum(diploid) 218.219
CNS0095594Slightly white alabastrum(diploid) 314.443
CNS0095595Whole white alabastrum(diploid) 220.323
CNS0095596Whole white alabastrum(diploid) 322.969
CNS0095597Whole white alabastrum(diploid) 417.280
CNS0095598Silvery flower (diploied) 121.081
CNS0095599Silvery flower (diploied) 221.532
CNS0095600Silvery flower (diploied) 319.641
CNS0095601Golden flower (diploid) 120.605
CNS0095602Golden flower (diploid) 218.672
CNS0095603Golden flower (diploid) 319.108
CNS0095604Slightly white alabastrum(tetraploid) 120.928
CNS0095605Slightly white alabastrum(tetraploid) 222.824
CNS0095606Slightly white alabastrum(tetraploid) 332.185
CNS0095607Whole white alabastrum(tetraploid) 112.216
CNS0095608Whole white alabastrum(tetraploid) 214.134
CNS0095609Whole white alabastrum(tetraploid) 331.145
CNS0095610Silvery flower (tetraploid) 118.781
CNS0095611Silvery flower (tetraploid) 230.290
CNS0095612Silvery flower (tetraploid) 325.403
CNS0095613Golden flower (tetraploid) 113.570
CNS0095614Golden flower (tetraploid) 214.775
CNS0095615Golden flower (tetraploid) 320.655
CRA001975CRR073297Stem 140.753
CRR073298Stem 238.860
CRR073299Stem 350.091
CRR073300Leaf 131.661
CRR073301Leaf 230.911
CRR073302Leaf 336.055
CRR073303Juvenile bud 139.713
CRR073304Juvenile bud 234.343
CRR073305Juvenile bud 334.619
CRR073306Third green 126.996
CRR073307Third green 218.441
CRR073308Third green 318.600
CRR073309Second white 134.045
CRR073310Second white 218.510
CRR073311Second white 314.781
CRR073312Silver flowering 115.481
CRR073313Silver flowering 217.815
CRR073314Silver flowering 312.108
CRR073315Gold flowering 1100.985
CRR073316Gold flowering 2103.228
CRR073317Gold flowering 386.289
CRR073318Tawny withering 126.842
CRR073319Tawny withering 232.138
CRR073320Tawny withering 328.721