Gene detail

Detail information of GWHGAAZE006323

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011028125.1	PREDICTED: lysine-specific demethylase JMJ706-like isoform X2 [Populus euphratica]
Swissprot	tr\|Q336N8\|JM706_ORYSJ	Lysine-specific demethylase JMJ706
trEMBL	tr\|B9GZJ0\|B9GZJ0_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE78413.2}
TAIR10	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23239724	23249264	-
GWHAAZE00000002	mRNA	23239724	23249264	-
GWHAAZE00000002	exon	23239724	23240059	-
GWHAAZE00000002	exon	23240773	23241016	-
GWHAAZE00000002	exon	23241301	23241682	-
GWHAAZE00000002	exon	23242600	23242995	-
GWHAAZE00000002	exon	23243724	23244001	-
GWHAAZE00000002	exon	23244586	23244665	-
GWHAAZE00000002	exon	23244755	23244808	-
GWHAAZE00000002	exon	23245317	23245536	-
GWHAAZE00000002	exon	23246653	23246809	-
GWHAAZE00000002	exon	23248258	23248606	-
GWHAAZE00000002	exon	23249259	23249264	-
GWHAAZE00000002	CDS	23249259	23249264	-
GWHAAZE00000002	CDS	23248258	23248606	-
GWHAAZE00000002	CDS	23246653	23246809	-
GWHAAZE00000002	CDS	23245317	23245536	-
GWHAAZE00000002	CDS	23244755	23244808	-
GWHAAZE00000002	CDS	23244586	23244665	-
GWHAAZE00000002	CDS	23243724	23244001	-
GWHAAZE00000002	CDS	23242600	23242995	-
GWHAAZE00000002	CDS	23241301	23241682	-
GWHAAZE00000002	CDS	23240773	23241016	-
GWHAAZE00000002	CDS	23239724	23240059	-

Transcript Sequence
>GWHTAAZE006331 ATGCAGGTGGAAGGACGGGCTTGTTTTTCCAGGGAGGCAAAATTGGAATTTCTGAAGCGTAAGAGGCTTCAGCGGATGAAAGCTGAAACGGCGAACGATATCTTAAATGTCACTAATATGATGACTAGAAGTGGGGGAGATGCTCTAAGAGCTTCTTCATCATGCGGGATGAGATTACACAGTGCTTCAAATGGGAATGATGTTTTATCAAAGCGCAAGGTTGCTAAGTTCGACACAACTGATCTCGATTGGACTGATAGAATCCCAGAGTGCCCTGTTTACTGTCCAAGTAAAGAGGAGTTTGAGGATCCTTTGATTTATCTGCAAAAAATAGCTCCTGAGGCTTCAAGATATGGTATATGCAAGATTGTTTCCCCTTTGAGTGCTTCTGTGCCTGCCGGTATGGTATTGATGAAAGAAAAAGCAGGTTTTAAATTTAAAACTAGAGTACAACCTCTCCGTCTTGCGGAGTGGGATACTGATGACAAAATCACATTTTTCATGAGTGGAAGGAATTATACATTCCGTGATTATGAGAAAATGGCAAACAAGGTTTTCGCTCGTAGATATTATAGTGCTGGATGTCTTCCTACCACCTATTTGGAAAAGGAATTTTGGAATGAAATTGCTAGTGGGAAAATGGAAAGCGTTGAATACGCATGTGATGTTGATGGTAGCGCGTTCTCATCTTCTCCCAACGACCAACTTGGAAAAAGCAAATGGAATCTGAAGAAACTTTCTCGGCTGTCTAAATCTGTTTTGCGGCTTCTAGGAACATCAATTCCGGGGGTTACTGAACCCATGCTTTATATTGGGATGTTATTTAGTATGTTTGCTTGGCACGTGGAAGATCATTATTTGTATAGTATCAATTATCATCACTGTGGAGCAGCAAAAACCTGGTATGGTGTTCCCGGACATGCTGCTGTAGATTTTGAAAATGTGGTCCGCGAACATGTGTATACTCATGATATTCTATCAACTGATGGAGAAGATGGAGCTTTCGATGTTCTTTTGGGGAAGACGACCTTGTTTCCTCCAAACATTTTGTTGGAACATAATGTTCCAGTATACAAGGCTGTCCAAAAGCCTGGGGAATTTGTTATAACCTTCCCCAGAGCCTATCATGCAGGGTTTAGTCATGGTTTTAACTGTGGCGAGGCTGTGAACTTTGCAATTGGTGATTGGTTCCCATTGGGATCAATTGCTAGTCGTCGATATGCACTTCTAAACAGGATACCTCTCCTTCCTCACGAAGAACTTCTCTGCAAAGAAGCAATGCTTCTCCATATGAATTCCGAATTTGAAAATGCCGATTATTCATCTGCGGACTTGGTCTCTCGCCGTAGCATAAAGGTCTCTTTTGTAAATTTAATGCGATTTCAGCACCGTGCCCGTTGGTGCCTTATGCAGTCAAGAGCGTGCATTGGTATTTGTGAAAATCCCAATGGAACCATCCTTTGCAGCCTTTGCAAACGCGACTGTTATATAGCATATCTTAACTGCAGTTGCTTCTTGCATCCTGTGTGCCTTCGCCATGAGATTAGATCACTCGACTTACCTTGTGGGGGAAACTGCACTCTCTACCTGAGGCATGACATTTCGGATATGGAAGCTGCGGCCAAGAAGTTTGAGAAGGATGTGGATATATTGCACAGAGTTGATCGGCAACAATGTACAACTGGTGATGATATGCTTTTGCTATCAAAGATTTTCCCAAGGACTGAAGAGGATGATGGATATACTCCTTTCTGCAAAATAAGATTTGAATTGAAGGCAGATATTATAACCAAAACTAAGAATCAGTTTGAAGATTTGGCCTCAGATGCTTCCCTATCTTGTGTTAAATCTGCATCTACTCTTTCTTCTTTTATGGAGCCCACTGAAACCTTTTCCACGGCTAGCAATGTAAGATTTAGCTCTTTTGAATTAACTGAAATAACATTATATGCTTCATCTTGCCAGCAGGTACAGAAATGTCAGGCTAACTTCGGTGTACTAAATCATGTCTCTACAAAGTCATCACTGTCAGAGGGAAGACCTATTGTGGTGGAGCAAGAGAGCGATGACTCTGATTCAGAGATTTTCAGGGTTAAACGCCGTTCTTCTGTGAAAGTAGTGCACAGAAATTCAAATGATGCCACTTCTCCAAATTTCGATCAACAGGGGCTTAAGCGACTAAAGAAACTTCAACCCGAAGGAAGGCACGGCCAATCAACATCGTCAGAGTGTCCCCTAGCTGACGATATGGGAGGATATAATCCTTCCGTTCATTGTAGGGAAGCTCAAGATGGTGTTACGAGATTGGCTGGTGGGGCCATCATTCCCATGTCCATGAAGTACAAGAAACCAACTGCAAACGGCGAAACAATGGGAAAACATAGAGAACCGCAGCGCCACAGAGACGATAGGATGCACCACGAGTTGGGAAAGAACATGAGAGAAGCACCCTCGATAGAGATTGGGCCGAAGCGGCTCAAAGTCAGAGGACCTGCACTTTGA

Network for GWHGAAZE006323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.18	JmjN	92	124	1.70E-13
PF02373.23	JmjC	268	391	1.40E-39
PF02928.17	zf-C5HC2	488	539	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.324
	SRR3591706	second leaf	6.291
	SRR3591707	mature leaf	3.111
	SRR3591708	Shoot apex	9.979
	SRR3591709	Stem	16.538
	SRR3591710	White floral bud	37.014
	SRR3591711	White flower	20.416
	SRR3591712	Green floral bud	10.961
	SRR3591713	Yellow flower	13.510
SRP173429	SRR8316895	Juvenile bud stage	14.138
	SRR8316896	Juvenile bud stage	12.732
	SRR8316897	Juvenile bud stage	12.888
	SRR8316894	Third green stage	2.306
	SRR8316900	Third green stage	5.678
	SRR8316901	Third green stage	7.603
	SRR8316898	Complete white stage	8.286
	SRR8316899	Complete white stage	8.985
	SRR8316903	Complete white stage	15.899
	SRR8316902	Silver flowering stage	7.415
	SRR8316904	Silver flowering stage	7.009
	SRR8316905	Silver flowering stage	2.844
	SRR8316906	Gold flowering stage	6.028
	SRR8316907	Gold flowering stage	7.770
	SRR8316908	Gold flowering stage	11.356
SRP132670	SRR6706286	Control	4.321
	SRR6706287	Light intensity 50%	6.650
	SRR6706288	Light intensity 20%	5.391
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.485
	CNS0095593	Slightly white alabastrum(diploid) 2	6.839
	CNS0095594	Slightly white alabastrum(diploid) 3	7.059
	CNS0095595	Whole white alabastrum(diploid) 2	7.368
	CNS0095596	Whole white alabastrum(diploid) 3	6.126
	CNS0095597	Whole white alabastrum(diploid) 4	6.447
	CNS0095598	Silvery flower (diploied) 1	5.439
	CNS0095599	Silvery flower (diploied) 2	7.674
	CNS0095600	Silvery flower (diploied) 3	17.989
	CNS0095601	Golden flower (diploid) 1	8.443
	CNS0095602	Golden flower (diploid) 2	18.958
	CNS0095603	Golden flower (diploid) 3	17.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.619
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.329
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.736
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.155
	CNS0095610	Silvery flower (tetraploid) 1	6.999
	CNS0095611	Silvery flower (tetraploid) 2	4.409
	CNS0095612	Silvery flower (tetraploid) 3	21.241
	CNS0095613	Golden flower (tetraploid) 1	6.532
	CNS0095614	Golden flower (tetraploid) 2	6.435
	CNS0095615	Golden flower (tetraploid) 3	9.403
CRA001975	CRR073297	Stem 1	9.476
	CRR073298	Stem 2	6.285
	CRR073299	Stem 3	6.546
	CRR073300	Leaf 1	8.873
	CRR073301	Leaf 2	7.878
	CRR073302	Leaf 3	5.222
	CRR073303	Juvenile bud 1	5.185
	CRR073304	Juvenile bud 2	10.440
	CRR073305	Juvenile bud 3	5.492
	CRR073306	Third green 1	18.419
	CRR073307	Third green 2	14.666
	CRR073308	Third green 3	20.242
	CRR073309	Second white 1	14.154
	CRR073310	Second white 2	18.316
	CRR073311	Second white 3	21.750
	CRR073312	Silver flowering 1	26.486
	CRR073313	Silver flowering 2	23.003
	CRR073314	Silver flowering 3	20.310
	CRR073315	Gold flowering 1	6.584
	CRR073316	Gold flowering 2	12.976
	CRR073317	Gold flowering 3	6.672
	CRR073318	Tawny withering 1	10.264
	CRR073319	Tawny withering 2	31.283
	CRR073320	Tawny withering 3	13.293