Gene detail

Detail information of GWHGAAZE006331

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN75134.1	5.76079E-93	hypothetical protein VITISV_018886 [Vitis vinifera]
trEMBL	tr\|A5BYQ3\|A5BYQ3_VITVI	2E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN75134.1}
TAIR10	AT5G46850.3	1E-39	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23430865	23433114	-
GWHAAZE00000002	mRNA	23430865	23433114	-
GWHAAZE00000002	exon	23430865	23431152	-
GWHAAZE00000002	exon	23431717	23432331	-
GWHAAZE00000002	exon	23432752	23432851	-
GWHAAZE00000002	exon	23433075	23433114	-
GWHAAZE00000002	five_prime_UTR	23433083	23433114	-
GWHAAZE00000002	CDS	23433075	23433082	-
GWHAAZE00000002	CDS	23432752	23432851	-
GWHAAZE00000002	CDS	23431717	23432331	-
GWHAAZE00000002	CDS	23430865	23431152	-

Transcript Sequence
>GWHTAAZE006339 TTGCTTCTCTTCTCTGGCAACGTCAATGCCAAATGGCTAGATATGCAGGGGAAATTCAGCAATTTTGTGTGCGCATTTGTCTGCGAATAGGAATTATGTTCTTACTCCTTGCTGGCACTGGCTCCTCAATTTTTCCTGAGGTGGGCAGTGTCAGTCCCTCGCACAGTTTCGAGAAATATATTATACAACCTTATTTTGAGAAACATGATAGTTTCATTGATTCAGATTTCCATGATTTCTTAGTGCATGAGCTCCCCCTTGGCTCGTGTGATGTGTTTCAAAATAAAACTGACAACCGTGTGCCGACTTTGTCAGTCACTCATCGCCGTCTGATCGGTGAAGGCTCTCATCGTCATTTATCCTCATCTCTTAGGTTTAAGGTCCCACACAAGTCCGTTTCTGAGCTACCCACACACTTTTGTGAGGCCATAATCATTGAGAGGCTGCCATCTGGTGTCTTTGCAGATCCATTCGAGCTACAGCATCTTCTCGAGCGCGGTGGTAAATTTCTGTATTGCCCTTCAAGCAACATTATGGGCTTATCTCCTTGTTTGGAGGTTTATAAGTTTGAAAGATTTGTTGTTGCAGTGTTTACAGATGCGGCTGCCTTTGGAGACACAAATCTAGAGTTGCCTTCAGTTCGATCAAATCAGTCCGTTGTTGAGGTTCACATGGATATCGGTTCTAATATATTAGAAGGAACCAAGGATGGACTGGAAGTGAACGTTGAGGTTCCACTACATGCACGTTATCCGCCATTAGGGGAACTCGGCTTTTATCGAGTTGAATTTGGCCCACCTGACTTATTCACCCGCTGCTGCTTCAAAGGGAATTTGAATAACCGGAGCTGTATATTTTCATCAACCAACAAAAATGCCAAATCCAATCCGGTTGTGTGGGACTTACCTTGCGGAATTAAGGAACATGCAGGGGCCGTCTCTTTTGTTACTTTCGCTTCGGCAATTCTATCAGCTCTCCTTATAGTGTTCATGTCTGTTTATCGTTCAAATGTCACAGTACACGATGACTTGAAACAGTCTTGA

Network for GWHGAAZE006331

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08320.13	PIG-X	104	319	2.30E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07541	PIGX	Metabolic pathways	map01100
K07541	PIGX	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0005789	cellular_component	endoplasmic reticulum membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.732
	SRR3591706	second leaf	13.956
	SRR3591707	mature leaf	13.991
	SRR3591708	Shoot apex	18.631
	SRR3591709	Stem	29.585
	SRR3591710	White floral bud	45.735
	SRR3591711	White flower	35.298
	SRR3591712	Green floral bud	30.697
	SRR3591713	Yellow flower	27.620
SRP173429	SRR8316895	Juvenile bud stage	16.774
	SRR8316896	Juvenile bud stage	24.555
	SRR8316897	Juvenile bud stage	13.191
	SRR8316894	Third green stage	9.585
	SRR8316900	Third green stage	35.049
	SRR8316901	Third green stage	32.276
	SRR8316898	Complete white stage	40.664
	SRR8316899	Complete white stage	40.418
	SRR8316903	Complete white stage	54.890
	SRR8316902	Silver flowering stage	33.138
	SRR8316904	Silver flowering stage	40.678
	SRR8316905	Silver flowering stage	20.735
	SRR8316906	Gold flowering stage	60.392
	SRR8316907	Gold flowering stage	59.480
	SRR8316908	Gold flowering stage	45.536
SRP132670	SRR6706286	Control	30.566
	SRR6706287	Light intensity 50%	32.727
	SRR6706288	Light intensity 20%	32.610
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.448
	CNS0095593	Slightly white alabastrum(diploid) 2	29.380
	CNS0095594	Slightly white alabastrum(diploid) 3	27.365
	CNS0095595	Whole white alabastrum(diploid) 2	27.011
	CNS0095596	Whole white alabastrum(diploid) 3	32.518
	CNS0095597	Whole white alabastrum(diploid) 4	31.944
	CNS0095598	Silvery flower (diploied) 1	38.247
	CNS0095599	Silvery flower (diploied) 2	34.546
	CNS0095600	Silvery flower (diploied) 3	62.734
	CNS0095601	Golden flower (diploid) 1	28.360
	CNS0095602	Golden flower (diploid) 2	38.264
	CNS0095603	Golden flower (diploid) 3	37.817
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.925
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.707
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.465
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.717
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.283
	CNS0095610	Silvery flower (tetraploid) 1	36.315
	CNS0095611	Silvery flower (tetraploid) 2	31.783
	CNS0095612	Silvery flower (tetraploid) 3	67.102
	CNS0095613	Golden flower (tetraploid) 1	29.191
	CNS0095614	Golden flower (tetraploid) 2	32.044
	CNS0095615	Golden flower (tetraploid) 3	34.764
CRA001975	CRR073297	Stem 1	33.440
	CRR073298	Stem 2	29.642
	CRR073299	Stem 3	30.088
	CRR073300	Leaf 1	40.437
	CRR073301	Leaf 2	42.839
	CRR073302	Leaf 3	29.576
	CRR073303	Juvenile bud 1	33.779
	CRR073304	Juvenile bud 2	31.160
	CRR073305	Juvenile bud 3	34.426
	CRR073306	Third green 1	57.502
	CRR073307	Third green 2	49.210
	CRR073308	Third green 3	45.093
	CRR073309	Second white 1	49.444
	CRR073310	Second white 2	39.567
	CRR073311	Second white 3	41.140
	CRR073312	Silver flowering 1	30.361
	CRR073313	Silver flowering 2	29.883
	CRR073314	Silver flowering 3	32.680
	CRR073315	Gold flowering 1	12.130
	CRR073316	Gold flowering 2	20.094
	CRR073317	Gold flowering 3	12.534
	CRR073318	Tawny withering 1	34.523
	CRR073319	Tawny withering 2	33.437
	CRR073320	Tawny withering 3	31.772