Gene detail

Detail information of GWHGAAZE006343

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009765106.1	1.12651E-83	PREDICTED: RING-H2 finger protein ATL29-like [Nicotiana sylvestris]
Swissprot	tr\|O49691\|ATL29_ARATH	2E-75	RING-H2 finger protein ATL29
trEMBL	tr\|A0A068UX95\|A0A068UX95_COFCA	1E-83	Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313\|EMBL:CDP13046.1}
TAIR10	AT4G17920.1	3E-45	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23664936	23665808	+
GWHAAZE00000002	mRNA	23664936	23665808	+
GWHAAZE00000002	exon	23664936	23665407	+
GWHAAZE00000002	exon	23665438	23665808	+
GWHAAZE00000002	CDS	23664936	23665407	+
GWHAAZE00000002	CDS	23665438	23665808	+

Transcript Sequence
>GWHTAAZE006351 ATGTCGACGACGGATAACTCCCCGCCACCTGTTCCGGAACCCTACACTTCCCCCTCGGTCACAATAATCGTCGCTATCATCCTCCTCGTCTTCTTCTTCATCGGCTTTTTTTCCATTTACTTTTGTAGATGCTTCATGCAAAGCTTGGAGTACTCGTTAAATAACGGACCGAGCCCCTCCAATGGCACCCTAGTCGCTCCCCCAGGTGTCGGCGGCCGTCCTGGCGGCCTCGACCCTCTAATCATTCAGTCTTTTCCAACGTTTACGTATGAAAGCGTAAAAGATTACCGGAGGGAGAAATACGGCCTAGAGTGCGCTATTTGCTTATGCGAGTTCGAAGACGAAAGTATCCTTAAGTTCTTGACGAATTGTTGTCATGTTTTTCATCAAGAGTGCATTGATACCTGGCTCGAGTCGCACAACTCGTGCCCAGTCTGTCGACGGAGGCTCGACGACATTGGGAAGTCGCCCGGCACCATGCATGATATAGATGAGAATGAGCCCTTAGAGGACCATAGTTTTCGCATTTCCATTAAGGATGAAAATAATAACGAGAGGGGAGCGTCGAGCTCGGGGGCAGCAATGGCTGGGGCTCAGGCTGCGGACAAACAAGTCAAGGGGCGCGATGAGGTTGAGAGATTTCCGAGGTCGAATTCGACAGGGCATTCAATAGTTAGTAGTAATAGATCTGCAGAAGAAGATAAGAAGTATACATTAATATTACCGGAACACATAAAAGCAAAGCTAATAAGGGGACATTGTGTGATAAAAAGTTGCACCACTTTTGGGGAATATAAAAGCAAAACTTCCTCCGGCAACGGTGGCTTTGGTGAGGTATCAGGT

Network for GWHGAAZE006343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	104	147	1.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	7.113
	SRR3591711	White flower	0.146
	SRR3591712	Green floral bud	2.458
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.103
	SRR8316896	Juvenile bud stage	0.141
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.070
	SRR8316900	Third green stage	0.044
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.078
	SRR8316904	Silver flowering stage	0.340
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.376
	SRR6706287	Light intensity 50%	1.286
	SRR6706288	Light intensity 20%	0.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.330
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.183
	CNS0095595	Whole white alabastrum(diploid) 2	0.381
	CNS0095596	Whole white alabastrum(diploid) 3	0.221
	CNS0095597	Whole white alabastrum(diploid) 4	1.140
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.268
	CNS0095600	Silvery flower (diploied) 3	0.092
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.288
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.903
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.023
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.965
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.168
	CNS0095613	Golden flower (tetraploid) 1	0.123
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.258
	CRR073298	Stem 2	0.161
	CRR073299	Stem 3	0.165
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.202
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	8.267
	CRR073304	Juvenile bud 2	17.912
	CRR073305	Juvenile bud 3	0.082
	CRR073306	Third green 1	1.212
	CRR073307	Third green 2	2.500
	CRR073308	Third green 3	0.941
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.188
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.225
	CRR073313	Silver flowering 2	2.764
	CRR073314	Silver flowering 3	0.735
	CRR073315	Gold flowering 1	1.419
	CRR073316	Gold flowering 2	0.112
	CRR073317	Gold flowering 3	0.990
	CRR073318	Tawny withering 1	0.771
	CRR073319	Tawny withering 2	2.327
	CRR073320	Tawny withering 3	1.537