Gene detail

Detail information of GWHGAAZE006344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009763212.1	3.46154E-98	PREDICTED: transcription factor bHLH71-like [Nicotiana sylvestris]
Swissprot	tr\|Q9C7T4\|BH096_ARATH	1E-63	Transcription factor bHLH96
trEMBL	tr\|F6HT82\|F6HT82_VITVI	2E-96	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57892.1}
TAIR10	AT1G72210.1	5E-38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23680261	23681975	+
GWHAAZE00000002	mRNA	23680261	23681975	+
GWHAAZE00000002	exon	23680261	23680644	+
GWHAAZE00000002	exon	23681520	23681975	+
GWHAAZE00000002	CDS	23680261	23680644	+
GWHAAZE00000002	CDS	23681520	23681975	+

Transcript Sequence
>GWHTAAZE006352 ATGGCTATGGAAACACTTTCTTCGAACGAGCTATTCAACTTCATCACATGTTCAGAGCCAATAAGTAACACTTTCTTTCTTGAAAATCCCCATAATAGACCCGAGGAGGAGTACTTGGTCGGTGATGTTATTGATCAAAGCTGCACAGCCATGACTCCCCCTCCTCCGGCGCCACAGCGAGGGTCCCCGGAGCACCGGCAGAGTGCGGCGGCAGTAGCGCAGGGGAGGAGGAAGAGGCGGAGGAGGGCGAAAGCGTGCAAGAACAAGGAAGAGGCGGAGAGTCAAAGGATGACTCACATTGCGGTTGAGAGGAATAGGAGGAAACAAATGAATGAGCACCTTGCTATCTTGCGCTCCCTCATGCCCCCATCTTATGCTCAAAGGGGTGACCAAGCCTCTATAGTAGGTGGTGCCATAGAATTTGTGAAGGAACTTGAGCACCTCCTTCAATCCCTTGAAGCTCAAAAGTTCCTAACCCTTCAACAAAGTGCAGTTAGAGACTCCACCACCGAGACCGCCACCACTTTCTTTCCCGCCCCTTTCTCACAATTCTTCGGTTACCCCCAATACGCTTGTTCTCATATTCCAAACAAGTACACGTCAAAGAGCAACGCGGATGTCGCGGAGATCGAGGTCACATTGATCGAAACTCATGCAAATATTCGAATCTTATCGAGAAGACGGCTAAGGCAGCTCTCAAAATTGGTTGCTGGGTTCCACAATTTTTGCCTTACCATACTTCATCTCAATCTCAACACTTTGGACCCTTTGGTCCTCTATTCCATTAGTGCCAAGGTATGTCTCTGTCCACTTGTATTTTTTATTTTTGAGATGCATTAA

Network for GWHGAAZE006344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	95	146	2.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.173
	SRR3591706	second leaf	8.215
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	14.721
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.355
	SRR3591711	White flower	1.112
	SRR3591712	Green floral bud	9.541
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.083
	SRR8316896	Juvenile bud stage	7.044
	SRR8316897	Juvenile bud stage	3.677
	SRR8316894	Third green stage	2.901
	SRR8316900	Third green stage	10.130
	SRR8316901	Third green stage	8.741
	SRR8316898	Complete white stage	0.161
	SRR8316899	Complete white stage	3.667
	SRR8316903	Complete white stage	0.150
	SRR8316902	Silver flowering stage	0.072
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.640
	SRR6706287	Light intensity 50%	13.061
	SRR6706288	Light intensity 20%	13.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.274
	CNS0095593	Slightly white alabastrum(diploid) 2	7.050
	CNS0095594	Slightly white alabastrum(diploid) 3	6.347
	CNS0095595	Whole white alabastrum(diploid) 2	5.042
	CNS0095596	Whole white alabastrum(diploid) 3	9.612
	CNS0095597	Whole white alabastrum(diploid) 4	3.432
	CNS0095598	Silvery flower (diploied) 1	5.454
	CNS0095599	Silvery flower (diploied) 2	3.043
	CNS0095600	Silvery flower (diploied) 3	0.208
	CNS0095601	Golden flower (diploid) 1	2.225
	CNS0095602	Golden flower (diploid) 2	0.821
	CNS0095603	Golden flower (diploid) 3	0.926
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.979
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.975
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.753
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.545
	CNS0095610	Silvery flower (tetraploid) 1	0.078
	CNS0095611	Silvery flower (tetraploid) 2	0.220
	CNS0095612	Silvery flower (tetraploid) 3	0.048
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.105
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	18.683
	CRR073298	Stem 2	15.653
	CRR073299	Stem 3	23.726
	CRR073300	Leaf 1	11.289
	CRR073301	Leaf 2	12.561
	CRR073302	Leaf 3	9.497
	CRR073303	Juvenile bud 1	6.920
	CRR073304	Juvenile bud 2	3.940
	CRR073305	Juvenile bud 3	5.199
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.190
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.647
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.391
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000