Detail information of GWHGAAZE006345


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008465985.19.09137E-82PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis melo]
Swissprottr|Q7XLY8|ATL41_ORYSJ4E-56E3 ubiquitin-protein ligase Os04g0590900
trEMBLtr|A0A0A0LH71|A0A0A0LH71_CUCSA5E-79Uncharacterized protein {ECO:0000313|EMBL:KGN60374.1}
TAIR10AT3G03550.12E-38RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2369283023693354-
GWHAAZE00000002mRNA2369283023693354-
GWHAAZE00000002exon2369283023693354-
GWHAAZE00000002CDS2369283023693354-
Transcript Sequence

Network for GWHGAAZE006345

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21271701.30E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.478
SRR3591706second leaf4.315
SRR3591707mature leaf3.124
SRR3591708Shoot apex7.087
SRR3591709Stem21.649
SRR3591710White floral bud8.487
SRR3591711White flower15.234
SRR3591712Green floral bud14.590
SRR3591713Yellow flower6.211
SRP173429 SRR8316895Juvenile bud stage 2.217
SRR8316896Juvenile bud stage 0.744
SRR8316897Juvenile bud stage 0.722
SRR8316894Third green stage 1.283
SRR8316900Third green stage 5.462
SRR8316901Third green stage 1.916
SRR8316898Complete white stage 0.982
SRR8316899Complete white stage 8.939
SRR8316903Complete white stage 1.028
SRR8316902Silver flowering stage1.233
SRR8316904Silver flowering stage2.142
SRR8316905Silver flowering stage1.326
SRR8316906Gold flowering stage 1.333
SRR8316907Gold flowering stage 1.616
SRR8316908Gold flowering stage 2.276
SRP132670SRR6706286Control2.395
SRR6706287Light intensity 50%2.094
SRR6706288Light intensity 20%3.652
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.163
CNS0095593Slightly white alabastrum(diploid) 21.327
CNS0095594Slightly white alabastrum(diploid) 31.157
CNS0095595Whole white alabastrum(diploid) 22.312
CNS0095596Whole white alabastrum(diploid) 31.096
CNS0095597Whole white alabastrum(diploid) 41.314
CNS0095598Silvery flower (diploied) 12.496
CNS0095599Silvery flower (diploied) 20.959
CNS0095600Silvery flower (diploied) 32.368
CNS0095601Golden flower (diploid) 10.565
CNS0095602Golden flower (diploid) 22.122
CNS0095603Golden flower (diploid) 33.144
CNS0095604Slightly white alabastrum(tetraploid) 13.901
CNS0095605Slightly white alabastrum(tetraploid) 21.696
CNS0095606Slightly white alabastrum(tetraploid) 35.544
CNS0095607Whole white alabastrum(tetraploid) 10.624
CNS0095608Whole white alabastrum(tetraploid) 20.401
CNS0095609Whole white alabastrum(tetraploid) 31.091
CNS0095610Silvery flower (tetraploid) 12.116
CNS0095611Silvery flower (tetraploid) 22.272
CNS0095612Silvery flower (tetraploid) 31.920
CNS0095613Golden flower (tetraploid) 10.290
CNS0095614Golden flower (tetraploid) 21.607
CNS0095615Golden flower (tetraploid) 31.840
CRA001975CRR073297Stem 10.868
CRR073298Stem 22.556
CRR073299Stem 31.791
CRR073300Leaf 12.343
CRR073301Leaf 22.169
CRR073302Leaf 33.344
CRR073303Juvenile bud 12.191
CRR073304Juvenile bud 21.311
CRR073305Juvenile bud 34.935
CRR073306Third green 10.584
CRR073307Third green 22.033
CRR073308Third green 30.756
CRR073309Second white 10.908
CRR073310Second white 21.263
CRR073311Second white 30.000
CRR073312Silver flowering 10.090
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 13.060
CRR073316Gold flowering 26.474
CRR073317Gold flowering 33.526
CRR073318Tawny withering 114.808
CRR073319Tawny withering 214.576
CRR073320Tawny withering 322.723