Detail information of GWHGAAZE006364


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP12995.10unnamed protein product [Coffea canephora]
Swissprottr|Q8RX22|MIP1_ARATH0MND1-interacting protein 1
trEMBLtr|A0A068UWR5|A0A068UWR5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313|EMBL:CDP12995.1}
TAIR10AT2G35330.20RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2426112924264701+
GWHAAZE00000002mRNA2426112924264701+
GWHAAZE00000002exon2426112924262781+
GWHAAZE00000002exon2426419224264701+
GWHAAZE00000002CDS2426112924262781+
GWHAAZE00000002CDS2426419224264701+
Transcript Sequence

Network for GWHGAAZE006364

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_36637111.30E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.744
SRR3591706second leaf8.648
SRR3591707mature leaf8.266
SRR3591708Shoot apex13.010
SRR3591709Stem20.811
SRR3591710White floral bud15.169
SRR3591711White flower17.131
SRR3591712Green floral bud19.516
SRR3591713Yellow flower13.867
SRP173429 SRR8316895Juvenile bud stage 10.200
SRR8316896Juvenile bud stage 13.455
SRR8316897Juvenile bud stage 6.779
SRR8316894Third green stage 6.218
SRR8316900Third green stage 23.393
SRR8316901Third green stage 18.927
SRR8316898Complete white stage 12.571
SRR8316899Complete white stage 24.619
SRR8316903Complete white stage 18.005
SRR8316902Silver flowering stage8.862
SRR8316904Silver flowering stage13.634
SRR8316905Silver flowering stage5.823
SRR8316906Gold flowering stage 17.251
SRR8316907Gold flowering stage 16.405
SRR8316908Gold flowering stage 17.734
SRP132670SRR6706286Control25.359
SRR6706287Light intensity 50%23.648
SRR6706288Light intensity 20%23.488
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.131
CNS0095593Slightly white alabastrum(diploid) 211.417
CNS0095594Slightly white alabastrum(diploid) 314.401
CNS0095595Whole white alabastrum(diploid) 212.417
CNS0095596Whole white alabastrum(diploid) 314.985
CNS0095597Whole white alabastrum(diploid) 412.779
CNS0095598Silvery flower (diploied) 111.009
CNS0095599Silvery flower (diploied) 29.330
CNS0095600Silvery flower (diploied) 323.828
CNS0095601Golden flower (diploid) 17.448
CNS0095602Golden flower (diploid) 218.701
CNS0095603Golden flower (diploid) 318.081
CNS0095604Slightly white alabastrum(tetraploid) 122.997
CNS0095605Slightly white alabastrum(tetraploid) 218.091
CNS0095606Slightly white alabastrum(tetraploid) 323.590
CNS0095607Whole white alabastrum(tetraploid) 117.655
CNS0095608Whole white alabastrum(tetraploid) 217.654
CNS0095609Whole white alabastrum(tetraploid) 325.621
CNS0095610Silvery flower (tetraploid) 123.258
CNS0095611Silvery flower (tetraploid) 224.914
CNS0095612Silvery flower (tetraploid) 318.687
CNS0095613Golden flower (tetraploid) 111.131
CNS0095614Golden flower (tetraploid) 216.469
CNS0095615Golden flower (tetraploid) 313.465
CRA001975CRR073297Stem 124.536
CRR073298Stem 221.648
CRR073299Stem 321.466
CRR073300Leaf 126.367
CRR073301Leaf 222.230
CRR073302Leaf 322.951
CRR073303Juvenile bud 133.928
CRR073304Juvenile bud 223.357
CRR073305Juvenile bud 336.902
CRR073306Third green 118.750
CRR073307Third green 216.393
CRR073308Third green 318.555
CRR073309Second white 117.750
CRR073310Second white 214.936
CRR073311Second white 314.927
CRR073312Silver flowering 111.614
CRR073313Silver flowering 29.825
CRR073314Silver flowering 39.305
CRR073315Gold flowering 16.573
CRR073316Gold flowering 29.146
CRR073317Gold flowering 38.038
CRR073318Tawny withering 118.063
CRR073319Tawny withering 213.024
CRR073320Tawny withering 316.000