Detail information of GWHGAAZE006398


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002279666.14.99799E-90PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Vitis vinifera]
Swissprottr|Q9LDD1|BRG3_ARATH2E-25Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBLtr|F6HTE1|F6HTE1_VITVI2E-90Putative uncharacterized protein {ECO:0000313|EMBL:CCB57951.1}
TAIR10AT5G47050.12E-18SBP (S-ribonuclease binding protein) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2499884424999713+
GWHAAZE00000002mRNA2499884424999713+
GWHAAZE00000002exon2499884424998964+
GWHAAZE00000002exon2499901524999109+
GWHAAZE00000002exon2499917724999713+
GWHAAZE00000002CDS2499884424998964+
GWHAAZE00000002CDS2499901524999109+
GWHAAZE00000002CDS2499917724999713+
Transcript Sequence

Network for GWHGAAZE006398

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_32022375.60E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.518
SRR3591706second leaf14.738
SRR3591707mature leaf25.966
SRR3591708Shoot apex11.912
SRR3591709Stem37.541
SRR3591710White floral bud27.647
SRR3591711White flower31.484
SRR3591712Green floral bud32.455
SRR3591713Yellow flower14.652
SRP173429 SRR8316895Juvenile bud stage 16.176
SRR8316896Juvenile bud stage 16.685
SRR8316897Juvenile bud stage 3.893
SRR8316894Third green stage 8.872
SRR8316900Third green stage 37.827
SRR8316901Third green stage 36.282
SRR8316898Complete white stage 15.811
SRR8316899Complete white stage 44.910
SRR8316903Complete white stage 21.534
SRR8316902Silver flowering stage20.201
SRR8316904Silver flowering stage30.945
SRR8316905Silver flowering stage13.781
SRR8316906Gold flowering stage 49.464
SRR8316907Gold flowering stage 50.231
SRR8316908Gold flowering stage 44.517
SRP132670SRR6706286Control43.655
SRR6706287Light intensity 50%44.102
SRR6706288Light intensity 20%44.203
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.620
CNS0095593Slightly white alabastrum(diploid) 223.359
CNS0095594Slightly white alabastrum(diploid) 320.089
CNS0095595Whole white alabastrum(diploid) 224.632
CNS0095596Whole white alabastrum(diploid) 334.089
CNS0095597Whole white alabastrum(diploid) 428.748
CNS0095598Silvery flower (diploied) 114.019
CNS0095599Silvery flower (diploied) 28.212
CNS0095600Silvery flower (diploied) 317.163
CNS0095601Golden flower (diploid) 16.988
CNS0095602Golden flower (diploid) 29.719
CNS0095603Golden flower (diploid) 39.750
CNS0095604Slightly white alabastrum(tetraploid) 117.522
CNS0095605Slightly white alabastrum(tetraploid) 219.346
CNS0095606Slightly white alabastrum(tetraploid) 333.509
CNS0095607Whole white alabastrum(tetraploid) 114.786
CNS0095608Whole white alabastrum(tetraploid) 210.430
CNS0095609Whole white alabastrum(tetraploid) 324.128
CNS0095610Silvery flower (tetraploid) 132.034
CNS0095611Silvery flower (tetraploid) 29.890
CNS0095612Silvery flower (tetraploid) 313.231
CNS0095613Golden flower (tetraploid) 115.421
CNS0095614Golden flower (tetraploid) 221.309
CNS0095615Golden flower (tetraploid) 319.130
CRA001975CRR073297Stem 113.250
CRR073298Stem 216.147
CRR073299Stem 39.018
CRR073300Leaf 123.580
CRR073301Leaf 225.492
CRR073302Leaf 311.870
CRR073303Juvenile bud 123.911
CRR073304Juvenile bud 215.680
CRR073305Juvenile bud 325.258
CRR073306Third green 137.598
CRR073307Third green 266.222
CRR073308Third green 346.288
CRR073309Second white 116.288
CRR073310Second white 216.130
CRR073311Second white 319.547
CRR073312Silver flowering 119.707
CRR073313Silver flowering 213.456
CRR073314Silver flowering 314.734
CRR073315Gold flowering 14.185
CRR073316Gold flowering 24.195
CRR073317Gold flowering 31.897
CRR073318Tawny withering 18.611
CRR073319Tawny withering 26.142
CRR073320Tawny withering 313.510