Detail information of GWHGAAZE006426


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI25860.30unnamed protein product [Vitis vinifera]
trEMBLtr|D7T5S6|D7T5S6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI25860.3}
TAIR10AT2G38970.18E-31Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2546375425465103-
GWHAAZE00000002mRNA2546375425465103-
GWHAAZE00000002exon2546375425465103-
GWHAAZE00000002CDS2546375425465103-
Transcript Sequence

Network for GWHGAAZE006426

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC410401.70E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.921
SRR3591706second leaf7.482
SRR3591707mature leaf2.054
SRR3591708Shoot apex37.158
SRR3591709Stem9.564
SRR3591710White floral bud1.281
SRR3591711White flower0.950
SRR3591712Green floral bud2.232
SRR3591713Yellow flower0.117
SRP173429 SRR8316895Juvenile bud stage 5.840
SRR8316896Juvenile bud stage 4.924
SRR8316897Juvenile bud stage 2.358
SRR8316894Third green stage 1.408
SRR8316900Third green stage 3.456
SRR8316901Third green stage 2.356
SRR8316898Complete white stage 0.034
SRR8316899Complete white stage 2.317
SRR8316903Complete white stage 0.672
SRR8316902Silver flowering stage0.057
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.009
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.059
SRP132670SRR6706286Control2.942
SRR6706287Light intensity 50%2.928
SRR6706288Light intensity 20%3.248
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.046
CNS0095593Slightly white alabastrum(diploid) 23.835
CNS0095594Slightly white alabastrum(diploid) 32.558
CNS0095595Whole white alabastrum(diploid) 20.937
CNS0095596Whole white alabastrum(diploid) 31.260
CNS0095597Whole white alabastrum(diploid) 41.655
CNS0095598Silvery flower (diploied) 12.164
CNS0095599Silvery flower (diploied) 23.174
CNS0095600Silvery flower (diploied) 31.003
CNS0095601Golden flower (diploid) 15.057
CNS0095602Golden flower (diploid) 22.080
CNS0095603Golden flower (diploid) 32.352
CNS0095604Slightly white alabastrum(tetraploid) 13.880
CNS0095605Slightly white alabastrum(tetraploid) 24.071
CNS0095606Slightly white alabastrum(tetraploid) 37.691
CNS0095607Whole white alabastrum(tetraploid) 11.628
CNS0095608Whole white alabastrum(tetraploid) 20.784
CNS0095609Whole white alabastrum(tetraploid) 31.613
CNS0095610Silvery flower (tetraploid) 10.185
CNS0095611Silvery flower (tetraploid) 20.596
CNS0095612Silvery flower (tetraploid) 30.138
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.040
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 115.042
CRR073298Stem 212.094
CRR073299Stem 317.153
CRR073300Leaf 15.113
CRR073301Leaf 25.015
CRR073302Leaf 32.095
CRR073303Juvenile bud 12.121
CRR073304Juvenile bud 21.236
CRR073305Juvenile bud 31.785
CRR073306Third green 10.000
CRR073307Third green 20.003
CRR073308Third green 30.154
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 16.611
CRR073316Gold flowering 25.835
CRR073317Gold flowering 34.989
CRR073318Tawny withering 117.071
CRR073319Tawny withering 217.545
CRR073320Tawny withering 317.623