Gene detail

Detail information of GWHGAAZE006432

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467221.1	1.9816E-120	PREDICTED: calcineurin B-like protein 3-like isoform X3 [Citrus sinensis]
Swissprot	tr\|Q75LU8\|CNBL3_ORYSJ	2E-114	Calcineurin B-like protein 3
trEMBL	tr\|A0A067GJ15\|A0A067GJ15_CITSI	7E-121	Uncharacterized protein {ECO:0000313\|EMBL:KDO78660.1}
TAIR10	AT4G26570.1	8E-87	calcineurin B-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25533446	25540708	-
GWHAAZE00000002	mRNA	25533446	25540708	-
GWHAAZE00000002	exon	25533446	25533562	-
GWHAAZE00000002	exon	25534093	25534173	-
GWHAAZE00000002	exon	25537332	25537384	-
GWHAAZE00000002	exon	25537584	25537692	-
GWHAAZE00000002	exon	25538281	25538363	-
GWHAAZE00000002	exon	25540588	25540708	-
GWHAAZE00000002	CDS	25540588	25540708	-
GWHAAZE00000002	CDS	25538281	25538363	-
GWHAAZE00000002	CDS	25537584	25537692	-
GWHAAZE00000002	CDS	25537332	25537384	-
GWHAAZE00000002	CDS	25534093	25534173	-
GWHAAZE00000002	CDS	25533446	25533562	-

Transcript Sequence
>GWHTAAZE006440 ATGTTGCAGTGCCTAGACGGATTAAAGCATTTGCTTTCTGCTGCTGTGAATTGCTGTGATGGCGATTATAAACAACCTACGGGGCTGGAAGATCCCGAAGCTCTTGCTAGGGAAACAGTGTTTAGTGTGAGTGAAATAGAAGCATTGTATGAACTATATAAGAAGATCAGCAGTGCTGTTACTGATGATGGGCTCATCAATAAGGTGTTCGACTTGTTCGACACAAAGCACAATGGGATATTAGACTTTGAAGAGTTTGCCCGTGCTCTCTCTGTTTTTCACCCAAGTGCACCGATTGATCAGAAGATTGATTTTTCATTCCAGCTGTATGATCTCAAGCAGCAAGAATTCATAGAAAGACAGGAGGTAAAGCAAATGGTGGTGGCTACCCTTGCTGAATCTGGAATGAATCTTTCTGACGATGTTATAGAAAGTATCATTGACAAGACCTTTGAGGAAGCTGATACTAAACATGATGGGAGGATTGACAAAGAAGAGTGGCGGAACCTTGTTCTGCGGCATCCATCCCTTTTGAAGAATATGACCCTTCAATACCTCAAGTAA

Network for GWHGAAZE006432

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13405.7	EF-hand_6	66	91	4.60E-05
PF13202.7	EF-hand_5	147	171	8.40E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.139
	SRR3591706	second leaf	8.433
	SRR3591707	mature leaf	11.559
	SRR3591708	Shoot apex	20.849
	SRR3591709	Stem	27.955
	SRR3591710	White floral bud	24.148
	SRR3591711	White flower	28.225
	SRR3591712	Green floral bud	28.204
	SRR3591713	Yellow flower	15.326
SRP173429	SRR8316895	Juvenile bud stage	22.814
	SRR8316896	Juvenile bud stage	28.569
	SRR8316897	Juvenile bud stage	13.259
	SRR8316894	Third green stage	13.180
	SRR8316900	Third green stage	37.621
	SRR8316901	Third green stage	31.907
	SRR8316898	Complete white stage	17.466
	SRR8316899	Complete white stage	44.463
	SRR8316903	Complete white stage	23.881
	SRR8316902	Silver flowering stage	15.588
	SRR8316904	Silver flowering stage	18.127
	SRR8316905	Silver flowering stage	9.415
	SRR8316906	Gold flowering stage	25.754
	SRR8316907	Gold flowering stage	30.678
	SRR8316908	Gold flowering stage	22.823
SRP132670	SRR6706286	Control	14.320
	SRR6706287	Light intensity 50%	17.270
	SRR6706288	Light intensity 20%	18.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.894
	CNS0095593	Slightly white alabastrum(diploid) 2	21.699
	CNS0095594	Slightly white alabastrum(diploid) 3	19.618
	CNS0095595	Whole white alabastrum(diploid) 2	26.861
	CNS0095596	Whole white alabastrum(diploid) 3	23.760
	CNS0095597	Whole white alabastrum(diploid) 4	23.685
	CNS0095598	Silvery flower (diploied) 1	19.757
	CNS0095599	Silvery flower (diploied) 2	19.991
	CNS0095600	Silvery flower (diploied) 3	23.593
	CNS0095601	Golden flower (diploid) 1	14.313
	CNS0095602	Golden flower (diploid) 2	15.945
	CNS0095603	Golden flower (diploid) 3	16.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.568
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.601
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.127
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.104
	CNS0095610	Silvery flower (tetraploid) 1	22.908
	CNS0095611	Silvery flower (tetraploid) 2	23.868
	CNS0095612	Silvery flower (tetraploid) 3	17.180
	CNS0095613	Golden flower (tetraploid) 1	13.464
	CNS0095614	Golden flower (tetraploid) 2	17.351
	CNS0095615	Golden flower (tetraploid) 3	17.036
CRA001975	CRR073297	Stem 1	19.687
	CRR073298	Stem 2	15.102
	CRR073299	Stem 3	14.106
	CRR073300	Leaf 1	13.830
	CRR073301	Leaf 2	12.468
	CRR073302	Leaf 3	16.593
	CRR073303	Juvenile bud 1	16.545
	CRR073304	Juvenile bud 2	12.833
	CRR073305	Juvenile bud 3	18.522
	CRR073306	Third green 1	6.578
	CRR073307	Third green 2	8.683
	CRR073308	Third green 3	7.071
	CRR073309	Second white 1	5.598
	CRR073310	Second white 2	8.528
	CRR073311	Second white 3	4.088
	CRR073312	Silver flowering 1	2.273
	CRR073313	Silver flowering 2	4.446
	CRR073314	Silver flowering 3	2.616
	CRR073315	Gold flowering 1	10.536
	CRR073316	Gold flowering 2	10.081
	CRR073317	Gold flowering 3	6.055
	CRR073318	Tawny withering 1	15.575
	CRR073319	Tawny withering 2	21.417
	CRR073320	Tawny withering 3	17.453