Gene detail

Detail information of GWHGAAZE006433

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245014.1	2.3431E-158	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Nelumbo nucifera]
Swissprot	tr\|Q9SSE5\|COL9_ARATH	8E-126	Zinc finger protein CONSTANS-LIKE 9
trEMBL	tr\|F6HCV2\|F6HCV2_VITVI	2E-154	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50047.1}
TAIR10	AT3G07650.4	1E-76	CONSTANS-like 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25576586	25579843	+
GWHAAZE00000002	mRNA	25576586	25579843	+
GWHAAZE00000002	exon	25576586	25577179	+
GWHAAZE00000002	exon	25578662	25578889	+
GWHAAZE00000002	exon	25579113	25579414	+
GWHAAZE00000002	exon	25579714	25579843	+
GWHAAZE00000002	CDS	25576586	25577179	+
GWHAAZE00000002	CDS	25578662	25578889	+
GWHAAZE00000002	CDS	25579113	25579414	+
GWHAAZE00000002	CDS	25579714	25579843	+

Transcript Sequence
>GWHTAAZE006441 ATGGGTCACCTTTGTGATTTCTGCGGGGAGCAAAGATCGATGATATATTGCCGGTCAGATGCTGCTTGCTTATGTTTGTCATGTGATCGGATCGTGCATTCGGCAAATGCTCTGTCCAAGCGTCACTCAAGGACCTTGGTGTGTGAGAGATGCAATTCTCAGCCTGCAATAGTTCGGTGTGTTGAAGAGAAGATATCCCTTTGTCAAAACTGTGATTGGAGCGGGCATGCTACTTCGAATTCAGGAGGACACCAGAGGCAAACAATTAATTGTTATTCGGGTTGTCCTTCTTCAGCAGAGCTTTCCAGGGTCTGGTTGTTTTTTCCTTCTATTTCTATGGACGATTCTTCTGCTACTTGCGAGCAGGGATTTGGTTCAATGAGTCTGACAGACCACGGTGGTACTAAATGTGAAACTCGAATAGATAGCAGCACTACAGATGTAGCCACACCAGGTAGAAATAAAACATGCAGCGTGCAAAATAAGGATACAAGCAGCATCTTGTCGGCACCCTTTTCGGTACCTGTTACAGATCCTGCAGCCGTTATTTCTGACCGGCCCCCTCCTGGTTCCATGAATTCACTCGCTGTCAAGCCATTCTGTTCTGGAACAAAAAAAGGTCATGGACTTGGCGATGATGATGATTTCTACAAAGACTTCAGTATGGATGATATGGATTTGAGTATGGAGAACTATGAAGAACTATTTGGTGTGTCTCAATACCAATCCCAACAGTTCTTTGAGAATGGTGGCATGGATAGCTTGTTTGGAATAGGGAAAGTTCCTGGTGCTACAGGCACCCGGGCTAAATACACAGCTGAGGGATATAAAGAAATGCATCCGGCATGCAGCAATCCGGCATCTGTGGATTCGATGATAAGCTGTAGAACGGATCCAAATCTTTGTTTTTCAAACCAAGAACTATCATTTTCTGGAGTGAGCGTGACCGGTGAGAGTAGTAACGGAGATCATCAACAGGATTGTGAGGTATCTCCAATGCTATTAGTGGGTGAACCTCCTCCTCCATGGCATAATACCCCCTGTCCTCCAGATGGTCAGTTGCTGCCATCATGTAGCAGGGATAGTGCTGTCTTGCGTTACAGGGAAAAGAAGAAGGCACGCAAGTTTGATAAGAAGATAAGGTATGCTTCACGCAAGGCAAGGGCGGATGTGAGGAAACGTGTGAAGGGGCGTTTTGTGAAGGCAGGCGATGCTTATGATTATGACCCATTGTGCGAGACAAGAAGCTACTGA

Network for GWHGAAZE006433

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	46	88	3.80E-05
PF06203.15	CCT	360	402	1.50E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.397
	SRR3591706	second leaf	32.316
	SRR3591707	mature leaf	29.179
	SRR3591708	Shoot apex	26.038
	SRR3591709	Stem	29.482
	SRR3591710	White floral bud	104.729
	SRR3591711	White flower	60.599
	SRR3591712	Green floral bud	31.856
	SRR3591713	Yellow flower	30.774
SRP173429	SRR8316895	Juvenile bud stage	9.410
	SRR8316896	Juvenile bud stage	11.233
	SRR8316897	Juvenile bud stage	4.706
	SRR8316894	Third green stage	8.168
	SRR8316900	Third green stage	27.995
	SRR8316901	Third green stage	24.249
	SRR8316898	Complete white stage	31.011
	SRR8316899	Complete white stage	35.976
	SRR8316903	Complete white stage	46.289
	SRR8316902	Silver flowering stage	20.811
	SRR8316904	Silver flowering stage	40.437
	SRR8316905	Silver flowering stage	21.086
	SRR8316906	Gold flowering stage	33.254
	SRR8316907	Gold flowering stage	33.126
	SRR8316908	Gold flowering stage	37.238
SRP132670	SRR6706286	Control	17.556
	SRR6706287	Light intensity 50%	20.935
	SRR6706288	Light intensity 20%	18.075
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.348
	CNS0095593	Slightly white alabastrum(diploid) 2	11.133
	CNS0095594	Slightly white alabastrum(diploid) 3	8.701
	CNS0095595	Whole white alabastrum(diploid) 2	9.053
	CNS0095596	Whole white alabastrum(diploid) 3	10.494
	CNS0095597	Whole white alabastrum(diploid) 4	7.670
	CNS0095598	Silvery flower (diploied) 1	19.473
	CNS0095599	Silvery flower (diploied) 2	12.749
	CNS0095600	Silvery flower (diploied) 3	35.075
	CNS0095601	Golden flower (diploid) 1	10.394
	CNS0095602	Golden flower (diploid) 2	23.074
	CNS0095603	Golden flower (diploid) 3	20.622
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.850
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.653
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.296
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.516
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.177
	CNS0095610	Silvery flower (tetraploid) 1	32.007
	CNS0095611	Silvery flower (tetraploid) 2	40.833
	CNS0095612	Silvery flower (tetraploid) 3	285.332
	CNS0095613	Golden flower (tetraploid) 1	31.977
	CNS0095614	Golden flower (tetraploid) 2	26.428
	CNS0095615	Golden flower (tetraploid) 3	30.443
CRA001975	CRR073297	Stem 1	46.960
	CRR073298	Stem 2	49.563
	CRR073299	Stem 3	44.825
	CRR073300	Leaf 1	79.960
	CRR073301	Leaf 2	76.425
	CRR073302	Leaf 3	62.958
	CRR073303	Juvenile bud 1	67.666
	CRR073304	Juvenile bud 2	81.020
	CRR073305	Juvenile bud 3	72.235
	CRR073306	Third green 1	102.575
	CRR073307	Third green 2	92.391
	CRR073308	Third green 3	92.637
	CRR073309	Second white 1	105.273
	CRR073310	Second white 2	125.501
	CRR073311	Second white 3	127.731
	CRR073312	Silver flowering 1	95.119
	CRR073313	Silver flowering 2	84.607
	CRR073314	Silver flowering 3	89.859
	CRR073315	Gold flowering 1	54.716
	CRR073316	Gold flowering 2	73.170
	CRR073317	Gold flowering 3	54.502
	CRR073318	Tawny withering 1	39.480
	CRR073319	Tawny withering 2	23.048
	CRR073320	Tawny withering 3	37.895