Detail information of GWHGAAZE006451


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009626627.12.2343E-170PREDICTED: 60S ribosomal protein L7a-1 [Nicotiana tomentosiformis]
Swissprottr|P35685|RL7A_ORYSJ3E-16860S ribosomal protein L7a
trEMBLtr|A0A022R3L9|A0A022R3L9_ERYGU2E-169Uncharacterized protein {ECO:0000313|EMBL:EYU34821.1}
TAIR10AT2G47610.14E-105Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2577261725775560-
GWHAAZE00000002mRNA2577261725775560-
GWHAAZE00000002exon2577547325775560-
GWHAAZE00000002exon2577510125775145-
GWHAAZE00000002exon2577478525774986-
GWHAAZE00000002exon2577360225773771-
GWHAAZE00000002exon2577337025773498-
GWHAAZE00000002exon2577315125773243-
GWHAAZE00000002exon2577261725773051-
GWHAAZE00000002five_prime_UTR2577547625775560-
GWHAAZE00000002CDS2577547325775475-
GWHAAZE00000002CDS2577510125775145-
GWHAAZE00000002CDS2577478525774986-
GWHAAZE00000002CDS2577360225773771-
GWHAAZE00000002CDS2577337025773498-
GWHAAZE00000002CDS2577315125773243-
GWHAAZE00000002CDS2577292025773051-
GWHAAZE00000002three_prime_UTR2577261725772919-
Transcript Sequence

Network for GWHGAAZE006451

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.27Ribosomal_L7Ae1142052.10E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02936RP-L7Ae, RPL7A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254biological_processribosome biogenesis
GO:1990904cellular_componentribonucleoprotein complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf389.784
SRR3591706second leaf135.766
SRR3591707mature leaf59.854
SRR3591708Shoot apex416.933
SRR3591709Stem173.413
SRR3591710White floral bud133.907
SRR3591711White flower216.443
SRR3591712Green floral bud310.452
SRR3591713Yellow flower156.370
SRP173429 SRR8316895Juvenile bud stage 143.872
SRR8316896Juvenile bud stage 190.765
SRR8316897Juvenile bud stage 134.335
SRR8316894Third green stage 84.845
SRR8316900Third green stage 281.442
SRR8316901Third green stage 236.325
SRR8316898Complete white stage 40.103
SRR8316899Complete white stage 227.344
SRR8316903Complete white stage 57.416
SRR8316902Silver flowering stage37.866
SRR8316904Silver flowering stage44.564
SRR8316905Silver flowering stage21.810
SRR8316906Gold flowering stage 85.425
SRR8316907Gold flowering stage 85.662
SRR8316908Gold flowering stage 132.270
SRP132670SRR6706286Control228.159
SRR6706287Light intensity 50%240.833
SRR6706288Light intensity 20%263.458
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1258.270
CNS0095593Slightly white alabastrum(diploid) 2315.468
CNS0095594Slightly white alabastrum(diploid) 3233.318
CNS0095595Whole white alabastrum(diploid) 2219.433
CNS0095596Whole white alabastrum(diploid) 3247.647
CNS0095597Whole white alabastrum(diploid) 4176.772
CNS0095598Silvery flower (diploied) 1117.531
CNS0095599Silvery flower (diploied) 2111.716
CNS0095600Silvery flower (diploied) 391.817
CNS0095601Golden flower (diploid) 183.811
CNS0095602Golden flower (diploid) 275.809
CNS0095603Golden flower (diploid) 382.627
CNS0095604Slightly white alabastrum(tetraploid) 1314.088
CNS0095605Slightly white alabastrum(tetraploid) 2314.984
CNS0095606Slightly white alabastrum(tetraploid) 3459.712
CNS0095607Whole white alabastrum(tetraploid) 1161.358
CNS0095608Whole white alabastrum(tetraploid) 2165.064
CNS0095609Whole white alabastrum(tetraploid) 3369.647
CNS0095610Silvery flower (tetraploid) 1172.370
CNS0095611Silvery flower (tetraploid) 2131.630
CNS0095612Silvery flower (tetraploid) 392.831
CNS0095613Golden flower (tetraploid) 181.325
CNS0095614Golden flower (tetraploid) 2107.719
CNS0095615Golden flower (tetraploid) 331.544
CRA001975CRR073297Stem 1259.104
CRR073298Stem 2254.840
CRR073299Stem 3320.808
CRR073300Leaf 1270.362
CRR073301Leaf 2289.021
CRR073302Leaf 3350.762
CRR073303Juvenile bud 1300.995
CRR073304Juvenile bud 2211.279
CRR073305Juvenile bud 3280.116
CRR073306Third green 132.757
CRR073307Third green 231.488
CRR073308Third green 343.002
CRR073309Second white 141.708
CRR073310Second white 231.836
CRR073311Second white 319.084
CRR073312Silver flowering 124.422
CRR073313Silver flowering 238.371
CRR073314Silver flowering 329.600
CRR073315Gold flowering 1137.033
CRR073316Gold flowering 2149.075
CRR073317Gold flowering 3110.080
CRR073318Tawny withering 1240.844
CRR073319Tawny withering 2196.485
CRR073320Tawny withering 3264.066