Detail information of GWHGAAZE006461


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrA7R385.1CSPLC_VITVI1.09926E-86RecName: Full=CASP-like protein 2B1; Short=VvCASPL2B1 [Vitis vinifera]
Swissprottr|A7R385|CSPLC_VITVI5E-89CASP-like protein 2B1
trEMBLtr|A0A067GSR3|A0A067GSR3_CITSI1E-86CASP-like protein {ECO:0000256|RuleBase:RU361233}
TAIR10AT2G35760.13E-43Uncharacterised protein family (UPF0497)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2596562425968155-
GWHAAZE00000002mRNA2596562425968155-
GWHAAZE00000002exon2596562425965878-
GWHAAZE00000002exon2596770125967755-
GWHAAZE00000002exon2596793225968155-
GWHAAZE00000002CDS2596793225968155-
GWHAAZE00000002CDS2596770125967755-
GWHAAZE00000002CDS2596562425965878-
Transcript Sequence

Network for GWHGAAZE006461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0169


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04535.13DUF58826793.80E-10
PF04535.13DUF588801472.30E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf123.530
SRR3591706second leaf41.218
SRR3591707mature leaf29.642
SRR3591708Shoot apex92.988
SRR3591709Stem366.235
SRR3591710White floral bud96.586
SRR3591711White flower43.198
SRR3591712Green floral bud107.715
SRR3591713Yellow flower15.064
SRP173429 SRR8316895Juvenile bud stage 64.160
SRR8316896Juvenile bud stage 69.607
SRR8316897Juvenile bud stage 27.024
SRR8316894Third green stage 30.991
SRR8316900Third green stage 103.955
SRR8316901Third green stage 105.239
SRR8316898Complete white stage 30.889
SRR8316899Complete white stage 170.824
SRR8316903Complete white stage 53.478
SRR8316902Silver flowering stage16.093
SRR8316904Silver flowering stage19.152
SRR8316905Silver flowering stage11.602
SRR8316906Gold flowering stage 25.764
SRR8316907Gold flowering stage 22.721
SRR8316908Gold flowering stage 24.357
SRP132670SRR6706286Control92.725
SRR6706287Light intensity 50%92.603
SRR6706288Light intensity 20%104.497
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1102.166
CNS0095593Slightly white alabastrum(diploid) 2112.376
CNS0095594Slightly white alabastrum(diploid) 387.328
CNS0095595Whole white alabastrum(diploid) 276.916
CNS0095596Whole white alabastrum(diploid) 357.211
CNS0095597Whole white alabastrum(diploid) 456.529
CNS0095598Silvery flower (diploied) 167.841
CNS0095599Silvery flower (diploied) 265.992
CNS0095600Silvery flower (diploied) 352.707
CNS0095601Golden flower (diploid) 156.924
CNS0095602Golden flower (diploid) 241.273
CNS0095603Golden flower (diploid) 341.727
CNS0095604Slightly white alabastrum(tetraploid) 179.074
CNS0095605Slightly white alabastrum(tetraploid) 259.308
CNS0095606Slightly white alabastrum(tetraploid) 3154.090
CNS0095607Whole white alabastrum(tetraploid) 146.617
CNS0095608Whole white alabastrum(tetraploid) 241.839
CNS0095609Whole white alabastrum(tetraploid) 351.840
CNS0095610Silvery flower (tetraploid) 163.137
CNS0095611Silvery flower (tetraploid) 250.462
CNS0095612Silvery flower (tetraploid) 322.604
CNS0095613Golden flower (tetraploid) 119.052
CNS0095614Golden flower (tetraploid) 233.233
CNS0095615Golden flower (tetraploid) 36.572
CRA001975CRR073297Stem 173.097
CRR073298Stem 278.653
CRR073299Stem 386.063
CRR073300Leaf 1118.620
CRR073301Leaf 2128.899
CRR073302Leaf 3147.295
CRR073303Juvenile bud 1121.323
CRR073304Juvenile bud 2134.700
CRR073305Juvenile bud 3129.605
CRR073306Third green 154.283
CRR073307Third green 254.511
CRR073308Third green 359.017
CRR073309Second white 18.646
CRR073310Second white 27.033
CRR073311Second white 33.031
CRR073312Silver flowering 11.432
CRR073313Silver flowering 22.746
CRR073314Silver flowering 31.403
CRR073315Gold flowering 113.020
CRR073316Gold flowering 216.760
CRR073317Gold flowering 317.638
CRR073318Tawny withering 190.135
CRR073319Tawny withering 274.972
CRR073320Tawny withering 3124.949