Detail information of GWHGAAZE006466


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003635632.10PREDICTED: U-box domain-containing protein 4 [Vitis vinifera]
Swissprottr|O22193|PUB4_ARATH4E-82U-box domain-containing protein 4
trEMBLtr|A5C9T4|A5C9T4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN79837.1}
TAIR10AT4G16490.14E-150ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2605916926061583-
GWHAAZE00000002mRNA2605916926061583-
GWHAAZE00000002exon2606054226061583-
GWHAAZE00000002exon2605978726060236-
GWHAAZE00000002exon2605916926059544-
GWHAAZE00000002five_prime_UTR2606136426061583-
GWHAAZE00000002CDS2606054226061363-
GWHAAZE00000002CDS2605978726060236-
GWHAAZE00000002CDS2605948226059544-
GWHAAZE00000002three_prime_UTR2605916926059481-
Transcript Sequence

Network for GWHGAAZE006466

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00514.24Arm1892273.60E-08
PF00514.24Arm2713103.40E-05
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.953
SRR3591706second leaf7.546
SRR3591707mature leaf13.504
SRR3591708Shoot apex16.942
SRR3591709Stem36.092
SRR3591710White floral bud24.807
SRR3591711White flower20.052
SRR3591712Green floral bud17.362
SRR3591713Yellow flower16.016
SRP173429 SRR8316895Juvenile bud stage 7.582
SRR8316896Juvenile bud stage 11.828
SRR8316897Juvenile bud stage 5.613
SRR8316894Third green stage 3.688
SRR8316900Third green stage 9.127
SRR8316901Third green stage 10.239
SRR8316898Complete white stage 6.345
SRR8316899Complete white stage 27.712
SRR8316903Complete white stage 10.172
SRR8316902Silver flowering stage5.124
SRR8316904Silver flowering stage4.828
SRR8316905Silver flowering stage2.894
SRR8316906Gold flowering stage 7.548
SRR8316907Gold flowering stage 8.290
SRR8316908Gold flowering stage 9.136
SRP132670SRR6706286Control15.550
SRR6706287Light intensity 50%17.287
SRR6706288Light intensity 20%18.344
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.312
CNS0095593Slightly white alabastrum(diploid) 29.335
CNS0095594Slightly white alabastrum(diploid) 37.654
CNS0095595Whole white alabastrum(diploid) 29.433
CNS0095596Whole white alabastrum(diploid) 35.683
CNS0095597Whole white alabastrum(diploid) 46.648
CNS0095598Silvery flower (diploied) 111.918
CNS0095599Silvery flower (diploied) 213.459
CNS0095600Silvery flower (diploied) 315.476
CNS0095601Golden flower (diploid) 115.702
CNS0095602Golden flower (diploid) 219.960
CNS0095603Golden flower (diploid) 317.145
CNS0095604Slightly white alabastrum(tetraploid) 18.325
CNS0095605Slightly white alabastrum(tetraploid) 26.525
CNS0095606Slightly white alabastrum(tetraploid) 317.559
CNS0095607Whole white alabastrum(tetraploid) 16.678
CNS0095608Whole white alabastrum(tetraploid) 23.834
CNS0095609Whole white alabastrum(tetraploid) 36.794
CNS0095610Silvery flower (tetraploid) 110.438
CNS0095611Silvery flower (tetraploid) 210.061
CNS0095612Silvery flower (tetraploid) 313.042
CNS0095613Golden flower (tetraploid) 19.465
CNS0095614Golden flower (tetraploid) 210.125
CNS0095615Golden flower (tetraploid) 310.128
CRA001975CRR073297Stem 113.899
CRR073298Stem 213.614
CRR073299Stem 314.104
CRR073300Leaf 117.306
CRR073301Leaf 214.936
CRR073302Leaf 310.910
CRR073303Juvenile bud 119.092
CRR073304Juvenile bud 29.879
CRR073305Juvenile bud 323.411
CRR073306Third green 111.187
CRR073307Third green 213.426
CRR073308Third green 312.331
CRR073309Second white 16.549
CRR073310Second white 27.350
CRR073311Second white 36.366
CRR073312Silver flowering 17.695
CRR073313Silver flowering 27.890
CRR073314Silver flowering 36.369
CRR073315Gold flowering 138.839
CRR073316Gold flowering 251.723
CRR073317Gold flowering 327.739
CRR073318Tawny withering 164.772
CRR073319Tawny withering 238.565
CRR073320Tawny withering 370.010