Gene detail

Detail information of GWHGAAZE006477

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011073487.1	PREDICTED: phosphatidate cytidylyltransferase [Sesamum indicum]
Swissprot	tr\|O04940\|CDS1_SOLTU	Phosphatidate cytidylyltransferase
trEMBL	tr\|A0A067JMG2\|A0A067JMG2_JATCU	Phosphatidate cytidylyltransferase {ECO:0000256\|RuleBase:RU003938}
TAIR10	AT1G62430.1	CDP-diacylglycerol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26224512	26229582	+
GWHAAZE00000002	mRNA	26224512	26229582	+
GWHAAZE00000002	exon	26224512	26224577	+
GWHAAZE00000002	exon	26225209	26225462	+
GWHAAZE00000002	exon	26225639	26225790	+
GWHAAZE00000002	exon	26226049	26226190	+
GWHAAZE00000002	exon	26226709	26226865	+
GWHAAZE00000002	exon	26227453	26227500	+
GWHAAZE00000002	exon	26227617	26227703	+
GWHAAZE00000002	exon	26228339	26228467	+
GWHAAZE00000002	exon	26228579	26228635	+
GWHAAZE00000002	exon	26229296	26229379	+
GWHAAZE00000002	exon	26229493	26229582	+
GWHAAZE00000002	CDS	26224512	26224577	+
GWHAAZE00000002	CDS	26225209	26225462	+
GWHAAZE00000002	CDS	26225639	26225790	+
GWHAAZE00000002	CDS	26226049	26226190	+
GWHAAZE00000002	CDS	26226709	26226865	+
GWHAAZE00000002	CDS	26227453	26227500	+
GWHAAZE00000002	CDS	26227617	26227703	+
GWHAAZE00000002	CDS	26228339	26228467	+
GWHAAZE00000002	CDS	26228579	26228635	+
GWHAAZE00000002	CDS	26229296	26229379	+
GWHAAZE00000002	CDS	26229493	26229582	+

Transcript Sequence
>GWHTAAZE006485 ATGCAAAAGGATAGTGGTCCAGCAACACCTACTGGTCGACTTCGGCGCCGTAGAGGTTCGAATGAAGTTCCTCCAGAGGTTAGCAAAACAAATGGAAGTGATTTACTTCTTAATGATCAAAATAAATACAGGTCAATGTGGATCCGTACATATTCAACTATTTGGATGATTGGCGGCTTTGCGCTCATAATCTACATGGGTCATCTCTATATTTGGGCTATGGTGGTTGTTATCCAAATATTCATGGCAAGAGAGTTGTTCAGTCTACTTCGGAAAACACATGAAGATAGTCACCTCCCAGGATTTAGGCTATTAAACTGGCACTTTTTCTTCACTGCAATGCTTTTTGTATATGGTCGCATTCTCAGTCAATGTCTTGTCAATACTGTTACTTCAGACAAGTTTCTGTATCAAGTTGTGGGCAGATTGATTAAGTATCATATGGTTACCTGTTATTTCTTGTATATTGCAGGTTTTATGTGGTTCATTCTTACGCTGAAGAAGAAAATGTACAAGTACCAGTTTGGCCAATATGCATGGACACATATGATTCTGATTGTGGTGTTTACGCAATCATCTTTCACTGTTGCCAACATTTTCGAAGGAATTTTCTGGTTCCTTCTTCCAGCATCACTTATTGTCATCAATGATATTGCTGCTTATATCTTTGGGTTCTTCTTTGGGAAAACTCCCTTGATCAAGTTGTCCCCAAAGAAAACTTGGGAGGGTTTTATCGGAGCATCTGTCACGACTATTATTTCAGCATTTCTGCTTGCTAATATTTTGGGTCGTTACCCTTGGTTAACATGTCCTAGGAAGGATTTATCAACGGGTTGGCTTCATTGTGATCCTGGTCCTCTTTTTAAGCCAGAGAATTTCACTTTCCCCGAATGGGTTCCTGAATGGTTCCCTTGGAAAGAGATGCAGGTTTTGCCAGTCCAATGGCATGCATTATGTCTTGGCCTTTTTGCATCAATAATTGCACCTTTTGGAGGCTTTTTTGCAAGTGGTTTTAAAAGAGCTTTTAAGATCAAGGATTTTGGTGATAGTATTCCTGGACATGGTGGAATGACTGATAGAATGGATTGCCAGATGGTGATGGCTGTGTTTGCATACATCTATCATCAGTCATTTGTTACGCCTCAAAGCGTATCTGTCGAGATGATTTTGGACCAGATATTGATGAACCTTAGTTTTGAGGAGCAAAAAGCCCTGTACAAGAAGCTTGCCCAGATCATCCAAGAGAGCGGGTTTGGAGGATCTTGA

Network for GWHGAAZE006477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01148.21	CTP_transf_1	47	378	1.00E-86

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00981	E2.7.7.41, CDS1, CDS2, cdsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups
GO:0004605	molecular_function	phosphatidate cytidylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.824
	SRR3591706	second leaf	28.499
	SRR3591707	mature leaf	30.856
	SRR3591708	Shoot apex	32.751
	SRR3591709	Stem	46.565
	SRR3591710	White floral bud	55.072
	SRR3591711	White flower	69.296
	SRR3591712	Green floral bud	49.792
	SRR3591713	Yellow flower	54.563
SRP173429	SRR8316895	Juvenile bud stage	18.130
	SRR8316896	Juvenile bud stage	21.466
	SRR8316897	Juvenile bud stage	16.929
	SRR8316894	Third green stage	10.378
	SRR8316900	Third green stage	24.796
	SRR8316901	Third green stage	26.144
	SRR8316898	Complete white stage	19.988
	SRR8316899	Complete white stage	50.499
	SRR8316903	Complete white stage	28.590
	SRR8316902	Silver flowering stage	26.164
	SRR8316904	Silver flowering stage	37.640
	SRR8316905	Silver flowering stage	15.019
	SRR8316906	Gold flowering stage	55.530
	SRR8316907	Gold flowering stage	47.746
	SRR8316908	Gold flowering stage	53.818
SRP132670	SRR6706286	Control	7.931
	SRR6706287	Light intensity 50%	8.558
	SRR6706288	Light intensity 20%	10.643
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.153
	CNS0095593	Slightly white alabastrum(diploid) 2	22.622
	CNS0095594	Slightly white alabastrum(diploid) 3	20.064
	CNS0095595	Whole white alabastrum(diploid) 2	17.666
	CNS0095596	Whole white alabastrum(diploid) 3	15.528
	CNS0095597	Whole white alabastrum(diploid) 4	19.162
	CNS0095598	Silvery flower (diploied) 1	29.881
	CNS0095599	Silvery flower (diploied) 2	22.937
	CNS0095600	Silvery flower (diploied) 3	43.487
	CNS0095601	Golden flower (diploid) 1	20.462
	CNS0095602	Golden flower (diploid) 2	41.871
	CNS0095603	Golden flower (diploid) 3	39.078
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.342
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.844
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.671
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.562
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.311
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.802
	CNS0095610	Silvery flower (tetraploid) 1	40.555
	CNS0095611	Silvery flower (tetraploid) 2	38.499
	CNS0095612	Silvery flower (tetraploid) 3	34.025
	CNS0095613	Golden flower (tetraploid) 1	22.678
	CNS0095614	Golden flower (tetraploid) 2	34.563
	CNS0095615	Golden flower (tetraploid) 3	44.167
CRA001975	CRR073297	Stem 1	15.002
	CRR073298	Stem 2	14.605
	CRR073299	Stem 3	15.862
	CRR073300	Leaf 1	15.514
	CRR073301	Leaf 2	12.254
	CRR073302	Leaf 3	14.964
	CRR073303	Juvenile bud 1	14.648
	CRR073304	Juvenile bud 2	10.671
	CRR073305	Juvenile bud 3	16.846
	CRR073306	Third green 1	11.936
	CRR073307	Third green 2	9.704
	CRR073308	Third green 3	11.378
	CRR073309	Second white 1	18.697
	CRR073310	Second white 2	20.348
	CRR073311	Second white 3	18.779
	CRR073312	Silver flowering 1	16.706
	CRR073313	Silver flowering 2	16.535
	CRR073314	Silver flowering 3	11.681
	CRR073315	Gold flowering 1	20.487
	CRR073316	Gold flowering 2	24.929
	CRR073317	Gold flowering 3	21.156
	CRR073318	Tawny withering 1	19.863
	CRR073319	Tawny withering 2	23.867
	CRR073320	Tawny withering 3	21.563