Detail information of GWHGAAZE006478


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004293350.11.117E-162PREDICTED: alkaline ceramidase 3-like [Fragaria vesca subsp. vesca]
trEMBLtr|W9QL13|W9QL13_9ROSA5E-161Alkaline ceramidase 3 {ECO:0000313|EMBL:EXB39651.1}
TAIR10AT4G22330.19E-124Alkaline phytoceramidase (aPHC)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2623182426233350-
GWHAAZE00000002mRNA2623182426233350-
GWHAAZE00000002exon2623182426232337-
GWHAAZE00000002exon2623309726233350-
GWHAAZE00000002CDS2623309726233350-
GWHAAZE00000002CDS2623182426232337-
Transcript Sequence

Network for GWHGAAZE006478

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05875.13Ceramidase82371.90E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04711ACER3, YDC1 Metabolic pathways map01100
Sphingolipid metabolismmap00600

Gene Ontology

GO term OntologyName
GO:0006672biological_processceramide metabolic process
GO:0016021cellular_componentintegral component of membrane
GO:0016811molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE006478.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560657075Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf54.634
SRR3591706second leaf14.281
SRR3591707mature leaf10.921
SRR3591708Shoot apex20.141
SRR3591709Stem43.861
SRR3591710White floral bud26.337
SRR3591711White flower35.691
SRR3591712Green floral bud24.342
SRR3591713Yellow flower27.780
SRP173429 SRR8316895Juvenile bud stage 29.627
SRR8316896Juvenile bud stage 29.881
SRR8316897Juvenile bud stage 15.103
SRR8316894Third green stage 12.713
SRR8316900Third green stage 32.548
SRR8316901Third green stage 39.636
SRR8316898Complete white stage 19.081
SRR8316899Complete white stage 63.832
SRR8316903Complete white stage 22.849
SRR8316902Silver flowering stage16.539
SRR8316904Silver flowering stage18.973
SRR8316905Silver flowering stage9.397
SRR8316906Gold flowering stage 37.000
SRR8316907Gold flowering stage 33.936
SRR8316908Gold flowering stage 27.817
SRP132670SRR6706286Control28.800
SRR6706287Light intensity 50%29.579
SRR6706288Light intensity 20%30.746
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.287
CNS0095593Slightly white alabastrum(diploid) 244.285
CNS0095594Slightly white alabastrum(diploid) 339.398
CNS0095595Whole white alabastrum(diploid) 241.905
CNS0095596Whole white alabastrum(diploid) 331.343
CNS0095597Whole white alabastrum(diploid) 429.170
CNS0095598Silvery flower (diploied) 157.108
CNS0095599Silvery flower (diploied) 245.758
CNS0095600Silvery flower (diploied) 347.084
CNS0095601Golden flower (diploid) 135.833
CNS0095602Golden flower (diploid) 251.003
CNS0095603Golden flower (diploid) 349.982
CNS0095604Slightly white alabastrum(tetraploid) 125.882
CNS0095605Slightly white alabastrum(tetraploid) 223.944
CNS0095606Slightly white alabastrum(tetraploid) 324.299
CNS0095607Whole white alabastrum(tetraploid) 123.500
CNS0095608Whole white alabastrum(tetraploid) 223.590
CNS0095609Whole white alabastrum(tetraploid) 325.745
CNS0095610Silvery flower (tetraploid) 126.467
CNS0095611Silvery flower (tetraploid) 223.382
CNS0095612Silvery flower (tetraploid) 320.522
CNS0095613Golden flower (tetraploid) 118.378
CNS0095614Golden flower (tetraploid) 221.521
CNS0095615Golden flower (tetraploid) 326.371
CRA001975CRR073297Stem 118.421
CRR073298Stem 215.867
CRR073299Stem 317.181
CRR073300Leaf 127.722
CRR073301Leaf 232.951
CRR073302Leaf 325.234
CRR073303Juvenile bud 129.569
CRR073304Juvenile bud 225.533
CRR073305Juvenile bud 329.994
CRR073306Third green 118.119
CRR073307Third green 219.309
CRR073308Third green 319.587
CRR073309Second white 119.301
CRR073310Second white 215.066
CRR073311Second white 314.122
CRR073312Silver flowering 119.194
CRR073313Silver flowering 216.671
CRR073314Silver flowering 313.056
CRR073315Gold flowering 115.482
CRR073316Gold flowering 214.985
CRR073317Gold flowering 314.284
CRR073318Tawny withering 144.278
CRR073319Tawny withering 267.641
CRR073320Tawny withering 351.147