Gene detail

Detail information of GWHGAAZE006493

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADC35600.1	2.5311E-134	class I KNOX homeobox transcription factor STM-like 2 [Prunus persica]
Swissprot	tr\|O22299\|LET6_SOLLC	2E-125	Homeobox protein knotted-1-like LET6
trEMBL	tr\|D3IWE9\|D3IWE9_PRUPE	9E-135	Class I KNOX homeobox transcription factor STM-like 2 {ECO:0000313\|EMBL:ADC35600.1}
TAIR10	AT1G62360.1	1E-91	KNOX/ELK homeobox transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26467178	26472316	+
GWHAAZE00000002	mRNA	26467178	26472316	+
GWHAAZE00000002	exon	26467178	26467442	+
GWHAAZE00000002	exon	26471253	26471497	+
GWHAAZE00000002	exon	26472113	26472316	+
GWHAAZE00000002	CDS	26467178	26467442	+
GWHAAZE00000002	CDS	26471253	26471497	+
GWHAAZE00000002	CDS	26472113	26472316	+

Transcript Sequence
>GWHTAAZE006501 ATGATAATTATACAGATCGGAGCGCCGGCAGATGTGGTAGCGAGGTTAGAGGAAGCGTGCAGCGCGTGTGTGGGAATGGGAGGCAGGCCAGTAAATATAGGGGAAGACCCGGGGCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTGACCAAGTATGAGCAAGAACTCTCCAAGCCCTTCAAAGAGGCCATGCTTTTTCTCTCTAGAGTCGAGTCTCAGTTCAAATCCCTCTCTTTTTCTAATAATTCCCCAGATTCTGCAGCTTGTAATGAAGCTATGGATAGAAATGGATCATCCGAAGAAGAGATCGATGTGAATAACAATCTGATAGATCCTCAAGCCGAAGACCGGGAGCTAAAAGGTCAGCTATTGCGCAAGTACAGTGGATATTTAGGCAGCCTCAAACAGGAGTTCATGAAGAAGAGAAAGAAAGGAAAGCTTCCTAAAGAAGCCCGACAACAATTGCTTGAGTGGTGGAGTCGACATTACAAGTGGCCGTACCCCTCGGAATCGCAGAAGTTGGCGTTGGCCGAATCAACGGGGCTGGATCAGAAACAGATAAACAATTGGTTTATTAACCAAAGGAAACGACACTGGAAGCCCTCAGAGGACATGCAGTTTGTAGTTATGGATGCGGCTCATCCTCACTATTACACCGAGAATGTTTTGGGCAACCCTTTTGCAATGGACATCTCGCCCGCTCTCCTTTAA

Network for GWHGAAZE006493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03791.14	KNOX2	33	78	7.10E-22
PF03789.14	ELK	119	140	2.20E-11
PF05920.12	Homeobox_KN	159	198	3.40E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.094
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	24.737
	SRR3591709	Stem	63.602
	SRR3591710	White floral bud	16.039
	SRR3591711	White flower	10.588
	SRR3591712	Green floral bud	1.171
	SRR3591713	Yellow flower	0.220
SRP173429	SRR8316895	Juvenile bud stage	4.010
	SRR8316896	Juvenile bud stage	0.057
	SRR8316897	Juvenile bud stage	0.208
	SRR8316894	Third green stage	2.093
	SRR8316900	Third green stage	0.128
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.072
	SRR8316899	Complete white stage	5.452
	SRR8316903	Complete white stage	2.487
	SRR8316902	Silver flowering stage	0.103
	SRR8316904	Silver flowering stage	0.048
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.118
	SRR8316907	Gold flowering stage	0.503
	SRR8316908	Gold flowering stage	0.125
SRP132670	SRR6706286	Control	1.359
	SRR6706287	Light intensity 50%	1.930
	SRR6706288	Light intensity 20%	1.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.171
	CNS0095593	Slightly white alabastrum(diploid) 2	7.578
	CNS0095594	Slightly white alabastrum(diploid) 3	3.694
	CNS0095595	Whole white alabastrum(diploid) 2	5.463
	CNS0095596	Whole white alabastrum(diploid) 3	0.325
	CNS0095597	Whole white alabastrum(diploid) 4	2.597
	CNS0095598	Silvery flower (diploied) 1	26.583
	CNS0095599	Silvery flower (diploied) 2	16.222
	CNS0095600	Silvery flower (diploied) 3	4.965
	CNS0095601	Golden flower (diploid) 1	22.349
	CNS0095602	Golden flower (diploid) 2	12.566
	CNS0095603	Golden flower (diploid) 3	12.225
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.889
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.896
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.279
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.087
	CNS0095610	Silvery flower (tetraploid) 1	0.498
	CNS0095611	Silvery flower (tetraploid) 2	14.624
	CNS0095612	Silvery flower (tetraploid) 3	4.393
	CNS0095613	Golden flower (tetraploid) 1	0.029
	CNS0095614	Golden flower (tetraploid) 2	0.537
	CNS0095615	Golden flower (tetraploid) 3	0.003
CRA001975	CRR073297	Stem 1	0.690
	CRR073298	Stem 2	0.783
	CRR073299	Stem 3	0.463
	CRR073300	Leaf 1	1.058
	CRR073301	Leaf 2	0.808
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.913
	CRR073304	Juvenile bud 2	0.248
	CRR073305	Juvenile bud 3	0.306
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.753
	CRR073309	Second white 1	0.330
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.145
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	44.390
	CRR073319	Tawny withering 2	41.694
	CRR073320	Tawny withering 3	41.152