Gene detail

Detail information of GWHGAAZE006497

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04430.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|O65388\|PLY2_ARATH	0	Putative pectate lyase 2 (Precursor)
trEMBL	tr\|A0A068U7B0\|A0A068U7B0_COFCA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT1G11920.1	1E-149	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26553532	26555912	+
GWHAAZE00000002	mRNA	26553532	26555912	+
GWHAAZE00000002	exon	26553532	26554263	+
GWHAAZE00000002	exon	26554471	26554574	+
GWHAAZE00000002	exon	26554868	26555006	+
GWHAAZE00000002	exon	26555685	26555912	+
GWHAAZE00000002	CDS	26553532	26554263	+
GWHAAZE00000002	CDS	26554471	26554574	+
GWHAAZE00000002	CDS	26554868	26555006	+
GWHAAZE00000002	CDS	26555685	26555912	+

Transcript Sequence
>GWHTAAZE006505 ATGGCCCACCTAACTTCCCTTCTACTCTTATGTTTTCTATCATTTTTTGCTTCAACATTTCAAGCTCACCGAACAACCAAACCCCCCCAAAAAGAACCTTCCTACCTCCCAACTAGTTACACCGGTCATCTACCTCAAAAGAAACTCTTCAACACAATAGACTCTTGTTGGAGATCAAACCCTAGATGGGCGCTTAATCGTAAAACCCTAGCCGACTGCGCCATTGGCTTTGGCAATGCCGCAGTTGGAGGGAAAAATGGTGCAATATATGTTGTAACTGATCCCTCAGATGATCCCATCGATCCAAAACAAGGTACACTAAGATACGGTGTGATCCAAACAAGACCTCTTTGGATCATTTTCAGAAGGGATATGGTTGTTAAGCTGGAAAACGAGCTTATTGTAAGTAGTTACAAGACTATAGATGGAAGAGGTGTGAAAGTGGAGATTGCGAATGGACCTTGCATTACCGTGGAAGGTGTGAGCAATGTTATTATACATGGGATTAGTATTCATGATTGTAAGCCTGGGAAAGCTGGCCTCGTTCGAAGCACTGAAGAGCACGTGGGCCATCGACTGGGGTGTGATGGAGATGGTATTAGTGTGTTTGCTTCCTCGAATGTGTGGATTGATCATTGTTATCTTGCTCGTTGCAGTGATGGCCTTATAGATATCACACATGCCTCAACTGGAGTTACCGTCTCTAACAACTACTTAACGGATCATGATAAGGTGATGTTGCTTGGACACAGTGATAGCTTTACAGAAGACAAAGACATGCAAGTTACTGTTGTTTTTAACCATTTTGGACCTGGTCTAGTTCAGAGAATGCCAAGGGTGAGGTATGGGTATGCTCATGTGGCAAACAATATGTATGATGAGTGGTTGATGTATGCAATTGGTGGGAGCTCCAACCCAACTATTTTAAGTGAAGGCAACTACTTTATGGCTTCTAATGATCCTTCTTCTAAACAGGTTACGAAGAGAGAGACAAATGAGGATTCAAATTTTTGGAAGAACTGGAAATGGAGATCTTCTAAGGATGTGTTTGGTAACGGGGCTTACTTTGTTCCATCAGGATTGGGAAGCTGCTCTCCACTTTATTCCCGATCTCAGTTATTTTGGGTTGCCCAAGGTTCTTTTGTTCCATTTTTGACTTCTGATGCGGGTCCATTGAAATGTGTTGTTACTAAAGCATGTTAA

Network for GWHGAAZE006497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.20	Pectate_lyase_4	132	315	2.90E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.350
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.498
	SRR3591710	White floral bud	0.256
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.311
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.160
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.103
	SRR8316900	Third green stage	0.368
	SRR8316901	Third green stage	0.270
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.002
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.233
	SRR6706287	Light intensity 50%	0.043
	SRR6706288	Light intensity 20%	0.087
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.048
	CNS0095593	Slightly white alabastrum(diploid) 2	0.304
	CNS0095594	Slightly white alabastrum(diploid) 3	0.334
	CNS0095595	Whole white alabastrum(diploid) 2	0.402
	CNS0095596	Whole white alabastrum(diploid) 3	0.164
	CNS0095597	Whole white alabastrum(diploid) 4	0.191
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.101
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.050
	CNS0095603	Golden flower (diploid) 3	0.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.075
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.788
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.181
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.140
	CRR073298	Stem 2	0.048
	CRR073299	Stem 3	0.116
	CRR073300	Leaf 1	0.134
	CRR073301	Leaf 2	0.050
	CRR073302	Leaf 3	0.370
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.039
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.352
	CRR073319	Tawny withering 2	0.658
	CRR073320	Tawny withering 3	0.031