Gene detail

Detail information of GWHGAAZE006498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007026134.1	0	WRKY family transcription factor [Theobroma cacao]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	1E-144	WRKY transcription factor 6
trEMBL	tr\|A0A061GGS5\|A0A061GGS5_THECC	0	WRKY family transcription factor {ECO:0000313\|EMBL:EOY28756.1}
TAIR10	AT1G62300.1	1E-102	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26588215	26590698	+
GWHAAZE00000002	mRNA	26588215	26590698	+
GWHAAZE00000002	exon	26588215	26588517	+
GWHAAZE00000002	exon	26588772	26588873	+
GWHAAZE00000002	exon	26589004	26589168	+
GWHAAZE00000002	exon	26589271	26589615	+
GWHAAZE00000002	exon	26589739	26589852	+
GWHAAZE00000002	exon	26590078	26590698	+
GWHAAZE00000002	CDS	26588215	26588517	+
GWHAAZE00000002	CDS	26588772	26588873	+
GWHAAZE00000002	CDS	26589004	26589168	+
GWHAAZE00000002	CDS	26589271	26589615	+
GWHAAZE00000002	CDS	26589739	26589852	+
GWHAAZE00000002	CDS	26590078	26590698	+

Transcript Sequence
>GWHTAAZE006506 ATGGAAAGAGGATGGGGTCTCACCCTCGATAGTTCCGATCGCTTTTTCGTCTCCGGCTTAAACCCCCGGTTGAACCACGCCAAGTCCGGTATGTTTTCCGGAAACGGCTTTCCGGTTAATTTGAATTACAAAGAAGAACCGGCCGGTTCACCACCGGTTGATGACAACCGGGTGCCTATGAGTGAGGTGGACTTTTTTTCCAGTAAGCCCAATGAACACGTTGATTCGAAGTTCAATAATATTATCGTCAAGAAGGAGAATTCACGAAATGATGCCAGTCCAATGAATGATTTGAATGTAAATACTGGTTTGCACCTTCTTACTACTGCTAACACGGGAAGTGATCAATCTACTGTGGATGATGGAATCTCATCCAACGGTGATGATACACGATCTAAAAATAAGCTAGCACAATTACAAATTGAACTAGAAAAAATGAATACAGAAAATCTGAGATTAAGAGGGATGCTAGCTCAAGTTACCAACAATTATAGTTCGTTACAAATGCAAATGGTCACAATAATGCAACAGCAACAGAATTCAGCAACAGATGGCACCCAACAACATAAGGTTATAGAAGGAAAATTAGGAGACAAAAAAGATCAAGTTAGGCAGTTCATTGATCTAGCCCCTAGTCGTGCACCCGAGACGGACGAGGCATCTAATAATACAACGTCAGAAGAAAGAACGCAATCCGGCTCGCCAATTAACGCCGCACAATTGGTAAATAATAGATATACAAATGAGACTATTGGATCTGAAAAAGAGAAGGCGAGTTTGAGGGATGACAAGAGAATTGCAAGAGAAGAAAGCCCCGAATCGGAAAGTTGGGCTCCTAATAAAGTTCCCAAATTGGTTGCTGCTAAGGCGGTTGATCAAGCGACCGAGGCTACAATGAGGAAAGCCAGAGTTTCAATAACCGATGGATGCCAGTGGCGTAAATATGGTCAAAAGATGGCAAAAGGTAACCCGTGCCCGCGAGCTTACTATCGGTGCACCATGGCCGTTGGTTGTCCCGTCCGCAAACAAGTACAAAGGTGTGCTGAAGACCGAACCATCCTAATAACGACCTATGAAGGTACCCACAACCACCCACTTCCTCCGGCTGCCATGGCGATGGCGTCAACAACATCAGCAGCCGCAAATATGCTACTTTCTGGCTCAATGTCGAGTGCTGACGGAATAATGAACCCTAATTTTCTAGCACGCGCAATTTTCCCTTCAAATTCTAGCATGGCTACAATTTCAGCTTCAGCCCCATTTCCAACAGTCACGTTGGACCTCACTCACTCCCCAAATCCATTACAAATGCAAAGAGCCCAATCCCAATCCCAATTCCAAGTCCCCTCACAATTGCCTCAGGTATTTGGTCAACCACTTCATAACCAATCCCAATTTTCAGGCCTTCAACTCTCTCAAAACATGGACTCAAGCCAATTGGCCCACCAGGGTCAACCTTCACAACCGCAGTCGTCATTTGCCGACACCCTTAGTGCAGCCACAGCCGCCATCACCGCCGACCCCAACTTCACTGCCGCCTTAGCAGCTGCCATCAGCAGTATCATGGGTGGCTCTCAGACGAACAACAACAACAATAATAATAGCAGCAACAACAATAGCCACAAGAATAGCAGTTTTACGGGGAATTAA

Network for GWHGAAZE006498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	308	365	7.30E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.312
	SRR3591706	second leaf	9.391
	SRR3591707	mature leaf	34.764
	SRR3591708	Shoot apex	5.112
	SRR3591709	Stem	38.625
	SRR3591710	White floral bud	26.276
	SRR3591711	White flower	79.065
	SRR3591712	Green floral bud	11.141
	SRR3591713	Yellow flower	112.538
SRP173429	SRR8316895	Juvenile bud stage	30.737
	SRR8316896	Juvenile bud stage	20.666
	SRR8316897	Juvenile bud stage	23.348
	SRR8316894	Third green stage	3.353
	SRR8316900	Third green stage	5.282
	SRR8316901	Third green stage	13.942
	SRR8316898	Complete white stage	3.415
	SRR8316899	Complete white stage	33.416
	SRR8316903	Complete white stage	4.788
	SRR8316902	Silver flowering stage	11.151
	SRR8316904	Silver flowering stage	14.045
	SRR8316905	Silver flowering stage	7.616
	SRR8316906	Gold flowering stage	59.985
	SRR8316907	Gold flowering stage	44.178
	SRR8316908	Gold flowering stage	70.627
SRP132670	SRR6706286	Control	13.520
	SRR6706287	Light intensity 50%	13.855
	SRR6706288	Light intensity 20%	5.856
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.478
	CNS0095593	Slightly white alabastrum(diploid) 2	35.061
	CNS0095594	Slightly white alabastrum(diploid) 3	34.328
	CNS0095595	Whole white alabastrum(diploid) 2	21.984
	CNS0095596	Whole white alabastrum(diploid) 3	2.736
	CNS0095597	Whole white alabastrum(diploid) 4	20.302
	CNS0095598	Silvery flower (diploied) 1	48.967
	CNS0095599	Silvery flower (diploied) 2	67.396
	CNS0095600	Silvery flower (diploied) 3	46.853
	CNS0095601	Golden flower (diploid) 1	64.694
	CNS0095602	Golden flower (diploid) 2	92.578
	CNS0095603	Golden flower (diploid) 3	82.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.097
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.629
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.995
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.960
	CNS0095610	Silvery flower (tetraploid) 1	23.525
	CNS0095611	Silvery flower (tetraploid) 2	8.108
	CNS0095612	Silvery flower (tetraploid) 3	27.901
	CNS0095613	Golden flower (tetraploid) 1	30.461
	CNS0095614	Golden flower (tetraploid) 2	29.535
	CNS0095615	Golden flower (tetraploid) 3	66.309
CRA001975	CRR073297	Stem 1	15.112
	CRR073298	Stem 2	10.842
	CRR073299	Stem 3	10.295
	CRR073300	Leaf 1	14.678
	CRR073301	Leaf 2	24.584
	CRR073302	Leaf 3	6.579
	CRR073303	Juvenile bud 1	7.535
	CRR073304	Juvenile bud 2	32.636
	CRR073305	Juvenile bud 3	15.431
	CRR073306	Third green 1	26.732
	CRR073307	Third green 2	18.294
	CRR073308	Third green 3	24.811
	CRR073309	Second white 1	28.552
	CRR073310	Second white 2	59.886
	CRR073311	Second white 3	67.844
	CRR073312	Silver flowering 1	230.565
	CRR073313	Silver flowering 2	188.550
	CRR073314	Silver flowering 3	199.490
	CRR073315	Gold flowering 1	61.650
	CRR073316	Gold flowering 2	108.010
	CRR073317	Gold flowering 3	60.131
	CRR073318	Tawny withering 1	122.468
	CRR073319	Tawny withering 2	257.483
	CRR073320	Tawny withering 3	71.268