Detail information of GWHGAAZE006501


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006371321.10hypothetical protein POPTR_0019s09060g [Populus trichocarpa]
Swissprottr|P50256|EF1AC_PORPU1E-103Elongation factor 1-alpha C
trEMBLtr|U5FFZ6|U5FFZ6_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP49119.1}
TAIR10AT1G18070.20Translation elongation factor EF1A/initiation factor IF2gamma family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2663161026642573-
GWHAAZE00000002mRNA2663161026642573-
GWHAAZE00000002exon2664248326642573-
GWHAAZE00000002exon2664135026641436-
GWHAAZE00000002exon2664107026641144-
GWHAAZE00000002exon2664034926640414-
GWHAAZE00000002exon2664005926640151-
GWHAAZE00000002exon2663917026639281-
GWHAAZE00000002exon2663705126637096-
GWHAAZE00000002exon2663686126636932-
GWHAAZE00000002exon2663581226635874-
GWHAAZE00000002exon2663555926635713-
GWHAAZE00000002exon2663540526635469-
GWHAAZE00000002exon2663388426634034-
GWHAAZE00000002exon2663346826633573-
GWHAAZE00000002exon2663319626633331-
GWHAAZE00000002exon2663221726632281-
GWHAAZE00000002exon2663193026632094-
GWHAAZE00000002exon2663175826631830-
GWHAAZE00000002exon2663161026631650-
GWHAAZE00000002CDS2664248326642573-
GWHAAZE00000002CDS2664135026641436-
GWHAAZE00000002CDS2664107026641144-
GWHAAZE00000002CDS2664034926640414-
GWHAAZE00000002CDS2664005926640151-
GWHAAZE00000002CDS2663917026639281-
GWHAAZE00000002CDS2663705126637096-
GWHAAZE00000002CDS2663686126636932-
GWHAAZE00000002CDS2663581226635874-
GWHAAZE00000002CDS2663555926635713-
GWHAAZE00000002CDS2663540526635469-
GWHAAZE00000002CDS2663388426634034-
GWHAAZE00000002CDS2663346826633573-
GWHAAZE00000002CDS2663319626633331-
GWHAAZE00000002CDS2663221726632281-
GWHAAZE00000002CDS2663193026632094-
GWHAAZE00000002CDS2663175826631830-
GWHAAZE00000002CDS2663161026631650-
Transcript Sequence

Network for GWHGAAZE006501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU1263321.60E-41
PF03144.26GTP_EFTU_D23704362.10E-07
PF03143.18GTP_EFTU_D34435516.20E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03267ERF3, GSPT mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0000288biological_processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0006415biological_processtranslational termination
GO:0003747molecular_functiontranslation release factor activity
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE006501.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200220Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf149.360
SRR3591706second leaf74.235
SRR3591707mature leaf56.838
SRR3591708Shoot apex101.125
SRR3591709Stem104.940
SRR3591710White floral bud129.352
SRR3591711White flower138.887
SRR3591712Green floral bud135.672
SRR3591713Yellow flower110.677
SRP173429 SRR8316895Juvenile bud stage 90.751
SRR8316896Juvenile bud stage 123.055
SRR8316897Juvenile bud stage 65.727
SRR8316894Third green stage 49.991
SRR8316900Third green stage 144.812
SRR8316901Third green stage 130.767
SRR8316898Complete white stage 66.106
SRR8316899Complete white stage 181.285
SRR8316903Complete white stage 103.224
SRR8316902Silver flowering stage65.392
SRR8316904Silver flowering stage93.819
SRR8316905Silver flowering stage40.478
SRR8316906Gold flowering stage 124.789
SRR8316907Gold flowering stage 115.942
SRR8316908Gold flowering stage 132.001
SRP132670SRR6706286Control167.000
SRR6706287Light intensity 50%166.578
SRR6706288Light intensity 20%177.276
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.206
CNS0095593Slightly white alabastrum(diploid) 298.457
CNS0095594Slightly white alabastrum(diploid) 383.524
CNS0095595Whole white alabastrum(diploid) 287.358
CNS0095596Whole white alabastrum(diploid) 393.197
CNS0095597Whole white alabastrum(diploid) 475.523
CNS0095598Silvery flower (diploied) 187.513
CNS0095599Silvery flower (diploied) 281.330
CNS0095600Silvery flower (diploied) 3144.379
CNS0095601Golden flower (diploid) 171.446
CNS0095602Golden flower (diploid) 2117.493
CNS0095603Golden flower (diploid) 3116.854
CNS0095604Slightly white alabastrum(tetraploid) 1109.694
CNS0095605Slightly white alabastrum(tetraploid) 292.300
CNS0095606Slightly white alabastrum(tetraploid) 3193.338
CNS0095607Whole white alabastrum(tetraploid) 166.192
CNS0095608Whole white alabastrum(tetraploid) 259.600
CNS0095609Whole white alabastrum(tetraploid) 3155.911
CNS0095610Silvery flower (tetraploid) 1180.487
CNS0095611Silvery flower (tetraploid) 2143.792
CNS0095612Silvery flower (tetraploid) 3119.428
CNS0095613Golden flower (tetraploid) 180.747
CNS0095614Golden flower (tetraploid) 2140.843
CNS0095615Golden flower (tetraploid) 391.517
CRA001975CRR073297Stem 1146.186
CRR073298Stem 2135.920
CRR073299Stem 3116.528
CRR073300Leaf 1148.511
CRR073301Leaf 2121.374
CRR073302Leaf 3137.636
CRR073303Juvenile bud 1145.471
CRR073304Juvenile bud 2113.164
CRR073305Juvenile bud 3146.386
CRR073306Third green 158.131
CRR073307Third green 252.345
CRR073308Third green 360.751
CRR073309Second white 151.653
CRR073310Second white 266.007
CRR073311Second white 359.457
CRR073312Silver flowering 151.923
CRR073313Silver flowering 251.889
CRR073314Silver flowering 350.628
CRR073315Gold flowering 143.955
CRR073316Gold flowering 285.122
CRR073317Gold flowering 342.373
CRR073318Tawny withering 1105.696
CRR073319Tawny withering 281.689
CRR073320Tawny withering 3121.588