Gene detail

Detail information of GWHGAAZE006503

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272817.1	1.554E-171	PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Vitis vinifera]
trEMBL	tr\|E0CVR6\|E0CVR6_VITVI	6E-172	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23227.3}
TAIR10	AT4G28200.1	3E-130	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26654335	26659202	-
GWHAAZE00000002	mRNA	26654335	26659202	-
GWHAAZE00000002	exon	26658798	26659202	-
GWHAAZE00000002	exon	26657183	26657760	-
GWHAAZE00000002	exon	26656190	26656406	-
GWHAAZE00000002	exon	26655429	26655601	-
GWHAAZE00000002	exon	26654806	26654989	-
GWHAAZE00000002	exon	26654335	26654415	-
GWHAAZE00000002	CDS	26658798	26659202	-
GWHAAZE00000002	CDS	26657183	26657760	-
GWHAAZE00000002	CDS	26656190	26656406	-
GWHAAZE00000002	CDS	26655429	26655601	-
GWHAAZE00000002	CDS	26654806	26654989	-
GWHAAZE00000002	CDS	26654335	26654415	-

Transcript Sequence
>GWHTAAZE006511 ATGGCGGACGTAGTGCAGTACAAGCTCGAGCGCATGGTCAATGAGCTCGACGACCTCGAAAGCAGAGGCCTTTTCTCCCGCCGCGAGATTGCCGAGATTGTCAAACAAAGGCGTAAATTCGAGTACAGGCTAAAGCGCCCAAGCCCTCTGAAGCAAGATTATTTGTCGTACATCGATTACGAGAAGAATCTCGATACACTCCGCCTCCTCCGCAAGAAGGCCGTGGCCCGTGAACTGAAGAAAAAAGGCAATAAGAAGATGAAGAAATCGGTTTCGGATTTCGCTGGGGTTGCTAGGATTGTTGATAGTTATAGGTTGGCTACTAATAGGTTTAAGGGAGATGTTGAGCTTTGGTTTCAGTATCTTGAGTTTTGTAGGGAGCGGAGGAATGGACATATGAAGAAGGTCCTAGCTCAAGTGATAAGGTTTCATCCAAAAGTGGCAGGGGTTTGGATCTATGCTGCATCTTGGGAGTTTGACTACAACTTGAACGTTGCAGCAGCTCGTGCTCTTATGCAAAGCGGTTTGAGAGCATGCCCAACTTCAGAAGATTTATGGGTTGAATATCTCCGCATGGAACTAACATACCTTAATAAGTTAAAAGCTCGGAAGGTTGCTCTTGGGGAAGATTCTGGGAAGCTGATTCATGATCCTGAAGACAAACAGTGGCAAGATGAAAACCAAGAATTATTTATGTCACTTGATGAGAAAAGAGAGAGTCATGAGGGGAAGAAAATAGATTTGTTTGGGGAACAAGGTTTTAGCATCCTTCAAACGGTTTATAGCGGTGCTGTTGAAGCTCTACCTTCGAGTTTTAGCCTGAGAACGCGGTTTCTTGAGATACTGGAAGCAATAAACTTGGCTCATTCAGATGAAATGCGAAAAGTGATTCTTGCTGATATAAAAAGAGATTTTTGGAAAGAAGCAGAATATTGGGACTGGCTTGCAAGACTAGAGATGAAGGATATGAGCAAAGAAATAACGAGACTAGGTGAAGCTCGGAATCTTGCAGAAAAGTTTTGCAACGGGAAGCTTTCACATGCAGTGGATTTATGGGTTTTGCGAATCTCAATAGAGATGAGATCCGTTCAAAATAGATCTCCTTCTCCATCCAAAGATGATGTCTTAGTTGTCTTTGAACTCCTAAGAAATGCTCTAATGAAAGTTTCAGTTTCAAAAGCTGAGAACTTGTGGCACATGGCCCTCAAATTTTTTGCAAATCAAAGACTTTACTTTAAGAAGCTGGTGGAGATTTCCCTCGATTTACTGGCTCGAGATGGTGGCAGTGATGATGGGTTTTCCCTCTCTTCTGCAATTGTCAATTTTGTTCTTCAGAAGGATGGCATTCAGAGTGCAAGAGATATATATAAACGATTTCTTGCTTTGCCTCATCCTGGCCTGGCAATATACAAGAATTGCATTGAGCTGGAATTAAACCTTGCATCTGCTGGTGATAAAGATTGTCTTGTAAAAGCTCGAAAGATATATGAATCTGCACTTTCAGCCTATGACCAAGATGTGAGCTTGTGGCAAGATTATTACTCTATGGAGAGTAAGATGGGAACGTCGGAAACGGCTGCTGCTGTCCATTGGCGTGCACGGAAGGTGCTTGGTGGCAACATTTCATTTCTGTCTTGA

Network for GWHGAAZE006503

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08640.12	U3_assoc_6	9	92	2.80E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14557	UTP6	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515	molecular_function	protein binding
GO:0030515	molecular_function	snoRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.103
	SRR3591706	second leaf	9.774
	SRR3591707	mature leaf	8.305
	SRR3591708	Shoot apex	15.220
	SRR3591709	Stem	10.996
	SRR3591710	White floral bud	11.619
	SRR3591711	White flower	15.925
	SRR3591712	Green floral bud	21.624
	SRR3591713	Yellow flower	10.261
SRP173429	SRR8316895	Juvenile bud stage	14.926
	SRR8316896	Juvenile bud stage	22.310
	SRR8316897	Juvenile bud stage	8.394
	SRR8316894	Third green stage	8.238
	SRR8316900	Third green stage	26.100
	SRR8316901	Third green stage	21.352
	SRR8316898	Complete white stage	5.313
	SRR8316899	Complete white stage	19.130
	SRR8316903	Complete white stage	9.095
	SRR8316902	Silver flowering stage	7.847
	SRR8316904	Silver flowering stage	9.279
	SRR8316905	Silver flowering stage	4.304
	SRR8316906	Gold flowering stage	12.599
	SRR8316907	Gold flowering stage	13.335
	SRR8316908	Gold flowering stage	13.101
SRP132670	SRR6706286	Control	14.031
	SRR6706287	Light intensity 50%	15.241
	SRR6706288	Light intensity 20%	15.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.892
	CNS0095593	Slightly white alabastrum(diploid) 2	16.735
	CNS0095594	Slightly white alabastrum(diploid) 3	16.239
	CNS0095595	Whole white alabastrum(diploid) 2	13.178
	CNS0095596	Whole white alabastrum(diploid) 3	15.763
	CNS0095597	Whole white alabastrum(diploid) 4	11.567
	CNS0095598	Silvery flower (diploied) 1	11.765
	CNS0095599	Silvery flower (diploied) 2	10.061
	CNS0095600	Silvery flower (diploied) 3	14.297
	CNS0095601	Golden flower (diploid) 1	10.076
	CNS0095602	Golden flower (diploid) 2	14.126
	CNS0095603	Golden flower (diploid) 3	11.908
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.990
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.066
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.693
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.083
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.005
	CNS0095610	Silvery flower (tetraploid) 1	13.715
	CNS0095611	Silvery flower (tetraploid) 2	13.977
	CNS0095612	Silvery flower (tetraploid) 3	9.013
	CNS0095613	Golden flower (tetraploid) 1	6.327
	CNS0095614	Golden flower (tetraploid) 2	11.638
	CNS0095615	Golden flower (tetraploid) 3	9.912
CRA001975	CRR073297	Stem 1	16.424
	CRR073298	Stem 2	13.464
	CRR073299	Stem 3	10.740
	CRR073300	Leaf 1	12.713
	CRR073301	Leaf 2	10.123
	CRR073302	Leaf 3	11.112
	CRR073303	Juvenile bud 1	11.501
	CRR073304	Juvenile bud 2	7.060
	CRR073305	Juvenile bud 3	13.767
	CRR073306	Third green 1	4.333
	CRR073307	Third green 2	3.401
	CRR073308	Third green 3	3.078
	CRR073309	Second white 1	5.319
	CRR073310	Second white 2	6.301
	CRR073311	Second white 3	6.330
	CRR073312	Silver flowering 1	4.687
	CRR073313	Silver flowering 2	5.132
	CRR073314	Silver flowering 3	4.786
	CRR073315	Gold flowering 1	6.126
	CRR073316	Gold flowering 2	5.964
	CRR073317	Gold flowering 3	4.691
	CRR073318	Tawny withering 1	7.082
	CRR073319	Tawny withering 2	7.795
	CRR073320	Tawny withering 3	10.969