Gene detail

Detail information of GWHGAAZE006512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007026083.1	0	ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
Swissprot	tr\|P29790\|ATPG_TOBAC	0	ATP synthase gamma chain, chloroplastic (Precursor)
trEMBL	tr\|A0A061GFT3\|A0A061GFT3_THECC	0	ATPase, F1 complex, gamma subunit protein {ECO:0000313\|EMBL:EOY28705.1}
TAIR10	AT4G04640.1	2E-146	ATPase, F1 complex, gamma subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26875839	26876969	-
GWHAAZE00000002	mRNA	26875839	26876969	-
GWHAAZE00000002	exon	26875839	26876969	-
GWHAAZE00000002	CDS	26875839	26876969	-

Transcript Sequence
>GWHTAAZE006520 ATGTCTTGCTCAAATCTTACAATGTGGGTCGCTCCCAAATCACCAATCTCCGATTCTTCGCCCCTCTCCTTTCGCTCTTCTGTCAGCCCTTTTCAATTCCCAACCCAAAATTCCCCAAATTCAAACCAATCGAAATCATCATCTGTAACTCCAATCCACTGCAGTCTCCGGGAGATTCGTGAACGTATAACCTCTGTTAAAAACACCCAAAAGATCACGGAGGCAATGAAGCTAGTCGCTGCTGCTAAAGTGAGAAGAGCCCAAGAAGCTGTGGTCAATGCAAGGCCTTTCTCAGAGACCCTTGTTGAGGTTCTTTACAGCATCAATGAGCAGCTTCAAACAGAAGACATTGATGTCCCACTTACCAATGTTAGGCCTGTCAAGAAAGTGGCCTTAGTTGTTGTAACTGGGGATCGAGGCCTTTGTGGTGGATTCAACAATCAAATATTGAAAAAAGCAGAAGCAAGAATTAGGGAATTGAAAGCTCTTGGTCTTGAGTATACTGTAATTAGTGTTGGCAAAAAGGGTAATTCCTACTTTCTCCGTAGGCCTTATATTCCAGTTGATAAGTATCTTGAAGGCGGTAGTTTGCCCACCGCTAAAGAAGCCCAAGCCATTGCTGATGATGTTTTCTCACTCTTTGTGAGTGAAGAGGTTGATAAGGTTGAGCTTTTGTACACTAAATTCTTGTCCTTGGTTAAATCCGATCCTGTGGTTCACACTTTGCTTCCGTTATCACCAAAGGGAGAGATTTGTGATATAAATGGGAAATGTGTTGATGCAGCTGAGGATGAGTTCTTTAGGTTGACTACAAAGGAAGGGAAATTGACCGTGGAGAGAGATGTTGTGAGGACCGAAACAACAGATTTTTCGCCAATCTTGCAATTCGAGCAGGATCCGGTTCAGATTCTTGATGCGTTGTTGCCACTTTACCTCAATAGTCAAATCCTGAGGGCTTTACAAGAATCTCTTGCCAGTGAGCTGGCTGCTAGGATGACAGCCATGAGCGCTGCAACAGACAACGCGGTGGAGCTCACCAGGAACTTGTCCCGAGTTTATAACAGGCAGCGTCAAGCAAAAATTACAGGCGAGATATTGGAGATTGTTGCTGGAGCAGATGCTTTGATCTAA

Network for GWHGAAZE006512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00231.20	ATP-synt	55	375	8.70E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02115	ATPF1G, atpG	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015986	biological_process	ATP synthesis coupled proton transport
GO:0045261	cellular_component	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	157.577
	SRR3591706	second leaf	847.679
	SRR3591707	mature leaf	877.721
	SRR3591708	Shoot apex	253.651
	SRR3591709	Stem	105.637
	SRR3591710	White floral bud	10.496
	SRR3591711	White flower	19.256
	SRR3591712	Green floral bud	14.736
	SRR3591713	Yellow flower	1.340
SRP173429	SRR8316895	Juvenile bud stage	95.931
	SRR8316896	Juvenile bud stage	80.330
	SRR8316897	Juvenile bud stage	53.000
	SRR8316894	Third green stage	36.911
	SRR8316900	Third green stage	76.147
	SRR8316901	Third green stage	60.149
	SRR8316898	Complete white stage	4.184
	SRR8316899	Complete white stage	20.986
	SRR8316903	Complete white stage	11.441
	SRR8316902	Silver flowering stage	1.440
	SRR8316904	Silver flowering stage	2.802
	SRR8316905	Silver flowering stage	0.631
	SRR8316906	Gold flowering stage	0.301
	SRR8316907	Gold flowering stage	0.814
	SRR8316908	Gold flowering stage	1.912
SRP132670	SRR6706286	Control	65.467
	SRR6706287	Light intensity 50%	49.825
	SRR6706288	Light intensity 20%	49.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.500
	CNS0095593	Slightly white alabastrum(diploid) 2	31.123
	CNS0095594	Slightly white alabastrum(diploid) 3	37.783
	CNS0095595	Whole white alabastrum(diploid) 2	29.740
	CNS0095596	Whole white alabastrum(diploid) 3	31.564
	CNS0095597	Whole white alabastrum(diploid) 4	16.301
	CNS0095598	Silvery flower (diploied) 1	67.372
	CNS0095599	Silvery flower (diploied) 2	80.393
	CNS0095600	Silvery flower (diploied) 3	15.298
	CNS0095601	Golden flower (diploid) 1	62.880
	CNS0095602	Golden flower (diploid) 2	34.777
	CNS0095603	Golden flower (diploid) 3	33.853
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.082
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.646
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.135
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.808
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.382
	CNS0095610	Silvery flower (tetraploid) 1	2.467
	CNS0095611	Silvery flower (tetraploid) 2	10.537
	CNS0095612	Silvery flower (tetraploid) 3	5.244
	CNS0095613	Golden flower (tetraploid) 1	1.252
	CNS0095614	Golden flower (tetraploid) 2	6.367
	CNS0095615	Golden flower (tetraploid) 3	3.594
CRA001975	CRR073297	Stem 1	235.180
	CRR073298	Stem 2	203.552
	CRR073299	Stem 3	275.966
	CRR073300	Leaf 1	59.276
	CRR073301	Leaf 2	73.680
	CRR073302	Leaf 3	75.909
	CRR073303	Juvenile bud 1	48.532
	CRR073304	Juvenile bud 2	28.148
	CRR073305	Juvenile bud 3	55.888
	CRR073306	Third green 1	3.976
	CRR073307	Third green 2	2.366
	CRR073308	Third green 3	5.640
	CRR073309	Second white 1	0.663
	CRR073310	Second white 2	2.136
	CRR073311	Second white 3	1.456
	CRR073312	Silver flowering 1	0.128
	CRR073313	Silver flowering 2	0.745
	CRR073314	Silver flowering 3	2.432
	CRR073315	Gold flowering 1	2056.799
	CRR073316	Gold flowering 2	2378.099
	CRR073317	Gold flowering 3	2298.108
	CRR073318	Tawny withering 1	147.998
	CRR073319	Tawny withering 2	121.655
	CRR073320	Tawny withering 3	120.579