Gene detail

Detail information of GWHGAAZE006513

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002304909.1	0	Peroxidase 42 precursor family protein [Populus trichocarpa]
Swissprot	tr\|Q9SB81\|PER42_ARATH	0	Peroxidase 42 (Precursor)
trEMBL	tr\|A9PHA0\|A9PHA0_POPTR	0	Peroxidase 42 family protein {ECO:0000313\|EMBL:EEE85420.1}
TAIR10	AT4G21960.1	1E-146	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26881064	26883331	+
GWHAAZE00000002	mRNA	26881064	26883331	+
GWHAAZE00000002	exon	26881064	26881291	+
GWHAAZE00000002	exon	26881699	26881887	+
GWHAAZE00000002	exon	26882384	26882549	+
GWHAAZE00000002	exon	26882922	26883331	+
GWHAAZE00000002	CDS	26881064	26881291	+
GWHAAZE00000002	CDS	26881699	26881887	+
GWHAAZE00000002	CDS	26882384	26882549	+
GWHAAZE00000002	CDS	26882922	26883331	+

Transcript Sequence
>GWHTAAZE006521 ATGGATCCTAAAGTTGTGTTCTTCTCTGCCCTGATATCCTTGTGGGCTTTATCTGCATTAGCACAAAACGAAGAGGAACAACCACCTGGTCTCGTTATCAACTTCTACAAAGATTCATGTCCTCAAGCTGAAGATATCATCAAAGAACAGGTCCAACTTCTTTACAAGAAACATAAGAACACTGCTTTCTCTTGGCTCAGGAACATCTTCCATGACTGCTCCGTTCAGTCCTGTGATGCATCACTACTATTGGATTCAACGAGGAGGACATTGTCTGAGAAAGAAACAGACAGGAGCTTTGGGCTTAGAAACTTCAAATATCTTGAAACCATTAAAGAAGCTGTGGAAAGAGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATCCTTGTGTTAGCTGGGAGAGATGGAATCGTTTCGCTAGGAGGGCCTTACATCCCTTTGAAAACTGGAAGAAGAGATGGTAGGAAGAGCAGATCAGATATACTAGAGGAATACCTACCGGACCACAATGAAAGCATGTCTGTTGTTCTTCAGAGGTTTGGAGCTATTGGTATTGACACCCCTGGAGTTGTTGCCTTGCTAGGTGCTCACAGTGTGGGTCGAACCCACTGCGTGAAGTTGGTGCACCGTTTATACCCCGAGGTGGACCCAGTGCTGGACCCTGGCCATGTTGAACACATGCTCCACAAGTGCCCAGACCAGATCCCAGACCCAAAGGCTGTGCAGTATGTGAGGAATGACAGAGGCACACCCATGAAGCTAGACAACAACTACTACAGGAACATTTTGGACAACAAGGGACTGTTAATAGTGGACCATCAGTTAGCCACAGACAAGAGGACAAAGAAGTATGTGAAGAAAATGGCTAAGAGTCAAAATTATTTCTTCAAGGAGTTTTCAAGAGCCATCACTATACTCACTGAGAACAATCCTCTCACTGGTACTAAGGGTGAGATTAGAAAGAAGTGTAATGTTGCCAACAAGCACTACTAG

Network for GWHGAAZE006513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	48	291	5.00E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.522
	SRR3591707	mature leaf	0.365
	SRR3591708	Shoot apex	0.356
	SRR3591709	Stem	1.973
	SRR3591710	White floral bud	1.317
	SRR3591711	White flower	0.783
	SRR3591712	Green floral bud	0.412
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.579
	SRR8316896	Juvenile bud stage	3.361
	SRR8316897	Juvenile bud stage	1.188
	SRR8316894	Third green stage	0.662
	SRR8316900	Third green stage	1.323
	SRR8316901	Third green stage	1.745
	SRR8316898	Complete white stage	0.740
	SRR8316899	Complete white stage	1.144
	SRR8316903	Complete white stage	0.417
	SRR8316902	Silver flowering stage	0.068
	SRR8316904	Silver flowering stage	0.881
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.729
	SRR8316907	Gold flowering stage	0.571
	SRR8316908	Gold flowering stage	0.240
SRP132670	SRR6706286	Control	2.070
	SRR6706287	Light intensity 50%	1.298
	SRR6706288	Light intensity 20%	1.249
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.895
	CNS0095593	Slightly white alabastrum(diploid) 2	0.359
	CNS0095594	Slightly white alabastrum(diploid) 3	1.448
	CNS0095595	Whole white alabastrum(diploid) 2	1.666
	CNS0095596	Whole white alabastrum(diploid) 3	2.073
	CNS0095597	Whole white alabastrum(diploid) 4	0.621
	CNS0095598	Silvery flower (diploied) 1	0.190
	CNS0095599	Silvery flower (diploied) 2	0.172
	CNS0095600	Silvery flower (diploied) 3	0.169
	CNS0095601	Golden flower (diploid) 1	0.295
	CNS0095602	Golden flower (diploid) 2	0.256
	CNS0095603	Golden flower (diploid) 3	0.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.261
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.292
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.367
	CNS0095610	Silvery flower (tetraploid) 1	0.315
	CNS0095611	Silvery flower (tetraploid) 2	1.193
	CNS0095612	Silvery flower (tetraploid) 3	1.564
	CNS0095613	Golden flower (tetraploid) 1	0.139
	CNS0095614	Golden flower (tetraploid) 2	0.151
	CNS0095615	Golden flower (tetraploid) 3	1.310
CRA001975	CRR073297	Stem 1	5.315
	CRR073298	Stem 2	4.919
	CRR073299	Stem 3	3.781
	CRR073300	Leaf 1	2.269
	CRR073301	Leaf 2	2.174
	CRR073302	Leaf 3	3.231
	CRR073303	Juvenile bud 1	0.644
	CRR073304	Juvenile bud 2	0.967
	CRR073305	Juvenile bud 3	1.426
	CRR073306	Third green 1	0.436
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.691
	CRR073309	Second white 1	0.040
	CRR073310	Second white 2	0.375
	CRR073311	Second white 3	0.303
	CRR073312	Silver flowering 1	0.240
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.185
	CRR073315	Gold flowering 1	4.981
	CRR073316	Gold flowering 2	6.482
	CRR073317	Gold flowering 3	1.857
	CRR073318	Tawny withering 1	0.047
	CRR073319	Tawny withering 2	0.456
	CRR073320	Tawny withering 3	0.000