Gene detail

Detail information of GWHGAAZE006535

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011007642.1	0	PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Populus euphratica]
Swissprot	tr\|O49561\|G2OX8_ARATH	1E-156	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|F6H7K2\|F6H7K2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48163.1}
TAIR10	AT4G21200.1	9E-126	gibberellin 2-oxidase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27421148	27424162	+
GWHAAZE00000002	mRNA	27421148	27424162	+
GWHAAZE00000002	exon	27421148	27421584	+
GWHAAZE00000002	exon	27423330	27423651	+
GWHAAZE00000002	exon	27423752	27424162	+
GWHAAZE00000002	CDS	27421148	27421584	+
GWHAAZE00000002	CDS	27423330	27423651	+
GWHAAZE00000002	CDS	27423752	27423982	+
GWHAAZE00000002	three_prime_UTR	27423983	27424162	+

Transcript Sequence
>GWHTAAZE006543 ATGGAGTCTGTGGACCCACCTTTTCAACAAACGTACAAGGCATTATTCGAGGACCCCGTTAACGGGGACTTGAACGAGGCCGTTATCGTTGAAGAGTGCGAGCTCCCGTTGATTGATTTGAGCCGGTTGAGCCTTGGAGAAGCTGAGAGAGAAGAGTGCAAGATAGAGATAGCGAAGGCCTCACAAGAATGGGGCTTCTTTCAAGTAGTGAACCATGGAATTTCTCGCGAGATTTTGGAGAGGATGAGGAGTGAGCAAGTGAAGGTGTTCAAAAACTCGTTTCGCGAGAAGGTGAGCGGTAAGAATTTGAATTTCCCGGCGGGCAGTTACCGTTGGGGCACCCCTTCGGCTACATGCCTCAGGCAGTTGGCTTGGTCAGAGGCTTTCCACGTGCCTTTAACTGATATTTCCAGCATAGGTGGCCCCACTCCTCTCAGCTCAACAATGGAACAATTTGCGATAACAGTTTCGGATCTAGCGCAAAAGTTAGCAGAAATTTTGGCCGAGAAAATGGGCCATAAGTCAGTTTTCTTTAAAGAAAATTGTTTGTCGAGCACTTGCTATCTGCGAATGAACAGATATCCACCATGTCCATTATCTCCTGAGGTGTTCGGGTTGATGCCGCACACCGATAGTGACTTTCTCACTATATTGCATCAAGATCAAATTGGAGGGTTGCAATTAGTGAAAGATGGGAAATGGATCGCAGTTAAACCTAATCAAGAAGCTCTAATAATCAATATTGGAGACCTATTTCAGGCATGGAGCGATGATGTGTATAAAAGCGTAGAGCATCGGGTTGTTACTAATAAGCAAGTGGAAAGGTTCTCCATCGCATATTTCTTTTGTCCTTCCTATGATACTGTAATTCAAAGCTGCGTCCAGCCTTCGATTTATAGAAAATTCAGCTTTAGAGAATTCAGACAACAAGTGCAAGATGATGTGAAAAAATTTGGTAACAAAATAGGACTTCCTAGGTTTCTTTTATAATGTTAATTGTTTTAAATTTTTCAAAAAATTATATATTTAGGTTGTGTAGAAGGGGAGAAAAGTATATAGCCATTTTGTTTAGTAGATGCTAGTTAATTACTTTTTGTTTCTTTCTAATTCAATCATGGATGAATGGGAATTCCAATAAAATTATCGATCACTTGATGATTGCAAGCAACA

Network for GWHGAAZE006535

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	35	131	3.30E-14
PF03171.21	2OG-FeII_Oxy	190	284	7.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.914
	SRR3591706	second leaf	0.375
	SRR3591707	mature leaf	1.040
	SRR3591708	Shoot apex	0.264
	SRR3591709	Stem	0.196
	SRR3591710	White floral bud	0.379
	SRR3591711	White flower	4.536
	SRR3591712	Green floral bud	0.142
	SRR3591713	Yellow flower	0.755
SRP173429	SRR8316895	Juvenile bud stage	0.499
	SRR8316896	Juvenile bud stage	0.974
	SRR8316897	Juvenile bud stage	0.365
	SRR8316894	Third green stage	1.003
	SRR8316900	Third green stage	4.173
	SRR8316901	Third green stage	8.127
	SRR8316898	Complete white stage	0.243
	SRR8316899	Complete white stage	0.607
	SRR8316903	Complete white stage	0.364
	SRR8316902	Silver flowering stage	0.076
	SRR8316904	Silver flowering stage	0.555
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.053
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	1.112
SRP132670	SRR6706286	Control	0.596
	SRR6706287	Light intensity 50%	0.825
	SRR6706288	Light intensity 20%	0.622
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.383
	CNS0095593	Slightly white alabastrum(diploid) 2	4.034
	CNS0095594	Slightly white alabastrum(diploid) 3	2.909
	CNS0095595	Whole white alabastrum(diploid) 2	4.162
	CNS0095596	Whole white alabastrum(diploid) 3	1.089
	CNS0095597	Whole white alabastrum(diploid) 4	4.049
	CNS0095598	Silvery flower (diploied) 1	2.274
	CNS0095599	Silvery flower (diploied) 2	2.358
	CNS0095600	Silvery flower (diploied) 3	0.249
	CNS0095601	Golden flower (diploid) 1	2.395
	CNS0095602	Golden flower (diploid) 2	0.902
	CNS0095603	Golden flower (diploid) 3	1.296
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.833
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.288
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.990
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.847
	CNS0095610	Silvery flower (tetraploid) 1	7.193
	CNS0095611	Silvery flower (tetraploid) 2	0.479
	CNS0095612	Silvery flower (tetraploid) 3	1.143
	CNS0095613	Golden flower (tetraploid) 1	1.104
	CNS0095614	Golden flower (tetraploid) 2	12.925
	CNS0095615	Golden flower (tetraploid) 3	0.832
CRA001975	CRR073297	Stem 1	6.318
	CRR073298	Stem 2	4.483
	CRR073299	Stem 3	0.603
	CRR073300	Leaf 1	14.228
	CRR073301	Leaf 2	24.803
	CRR073302	Leaf 3	2.633
	CRR073303	Juvenile bud 1	5.064
	CRR073304	Juvenile bud 2	1.575
	CRR073305	Juvenile bud 3	8.894
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.049
	CRR073308	Third green 3	0.340
	CRR073309	Second white 1	0.618
	CRR073310	Second white 2	0.612
	CRR073311	Second white 3	0.378
	CRR073312	Silver flowering 1	0.154
	CRR073313	Silver flowering 2	0.185
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.090
	CRR073316	Gold flowering 2	1.406
	CRR073317	Gold flowering 3	0.159
	CRR073318	Tawny withering 1	0.003
	CRR073319	Tawny withering 2	0.043
	CRR073320	Tawny withering 3	0.248