Gene detail

Detail information of GWHGAAZE006542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008371207.1	3.2452E-116	PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Malus domestica]
Swissprot	tr\|Q41932\|PSBQ2_ARATH	2E-113	Oxygen-evolving enhancer protein 3-2, chloroplastic (Precursor)
trEMBL	tr\|A9PF82\|A9PF82_POPTR	2E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:ABK95035.1}
TAIR10	AT4G05180.1	2E-64	photosystem II subunit Q-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27546434	27549757	+
GWHAAZE00000002	mRNA	27546434	27549757	+
GWHAAZE00000002	exon	27546434	27546805	+
GWHAAZE00000002	exon	27547510	27547805	+
GWHAAZE00000002	exon	27549659	27549757	+
GWHAAZE00000002	five_prime_UTR	27546434	27546501	+
GWHAAZE00000002	CDS	27546502	27546805	+
GWHAAZE00000002	CDS	27547510	27547805	+
GWHAAZE00000002	CDS	27549659	27549757	+

Transcript Sequence
>GWHTAAZE006550 CATCTCTATCTCTGTCTTGCCATCAAAACTTTTCTGAAGGGATTAGAAAAACAAACTCCAGTTCATAAATGGCTCAATCTACGGCTTCAATGAGCGGCTTACGTGGCTCATCTCAAGCTGTCTTGGAAGGTAGCCTCCAGCTTGGTGGCTCAATCCGTTTGAGCACCGTAAACTGTAGCCGCGTTGCGGTGGCTCGGCCAGGGTTCACCATTAGAGCCCAGCAGGGATCAGTTGAGATGACGGAAACTAGCCGCCGAGCAGTGTTGGGTCTTGTTGCAGCTGGGTTGGCTACCGGGTCTTTTGTCCAAGCTGTGCTAGCCGAGGCTAGACCCATCAAGGTTGGACCACCTCCTCCTCCCTCCGGTGGACTGCCTGGAACACTAAACTCAGATGAGGCTAGAGACCTTGATTTACCACTCAAGGAGAGATTTTTCATTCAACCATTGACCCCAGTTGAGGCAGCAGCGAGGGCAAAGGAATCGGCTAAAGAAATTGTGAATGTGAAACAATTCATTGATAAAAAGGCCTGGCCTTCTGTCCAAAATGATCTTCGTCTTAGGGCAGAGTACCTACGCTATGACCTCAACACTGTCATCTCCTCAAAGTCTAAGGAAGAAAAGAAAGTGCTCAAAGATCTCTCTGGAAAGCTCTTCCAGGACCTCAACAATTTGGACCATGCAGCAAAGGTGAAGAGCAGTTCACAAGCAGAGAAGTACTACACAGACACTGTTTCTAGCCTTAAAGATGTTCTTGCCAAGCTGGGTTAG

Network for GWHGAAZE006542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05757.12	PsbQ	37	232	4.80E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08901	psbQ	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0009523	cellular_component	photosystem II
GO:0009654	cellular_component	photosystem II oxygen evolving complex
GO:0019898	cellular_component	extrinsic component of membrane
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	256.010
	SRR3591706	second leaf	550.974
	SRR3591707	mature leaf	205.434
	SRR3591708	Shoot apex	329.670
	SRR3591709	Stem	123.263
	SRR3591710	White floral bud	89.792
	SRR3591711	White flower	84.878
	SRR3591712	Green floral bud	30.141
	SRR3591713	Yellow flower	139.639
SRP173429	SRR8316895	Juvenile bud stage	62.041
	SRR8316896	Juvenile bud stage	66.307
	SRR8316897	Juvenile bud stage	52.001
	SRR8316894	Third green stage	22.913
	SRR8316900	Third green stage	69.187
	SRR8316901	Third green stage	79.345
	SRR8316898	Complete white stage	73.070
	SRR8316899	Complete white stage	97.046
	SRR8316903	Complete white stage	130.175
	SRR8316902	Silver flowering stage	39.486
	SRR8316904	Silver flowering stage	35.694
	SRR8316905	Silver flowering stage	19.486
	SRR8316906	Gold flowering stage	43.367
	SRR8316907	Gold flowering stage	50.551
	SRR8316908	Gold flowering stage	38.264
SRP132670	SRR6706286	Control	114.213
	SRR6706287	Light intensity 50%	74.124
	SRR6706288	Light intensity 20%	63.624
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.980
	CNS0095593	Slightly white alabastrum(diploid) 2	63.309
	CNS0095594	Slightly white alabastrum(diploid) 3	54.056
	CNS0095595	Whole white alabastrum(diploid) 2	57.075
	CNS0095596	Whole white alabastrum(diploid) 3	71.319
	CNS0095597	Whole white alabastrum(diploid) 4	48.986
	CNS0095598	Silvery flower (diploied) 1	174.935
	CNS0095599	Silvery flower (diploied) 2	180.215
	CNS0095600	Silvery flower (diploied) 3	221.962
	CNS0095601	Golden flower (diploid) 1	215.923
	CNS0095602	Golden flower (diploid) 2	194.574
	CNS0095603	Golden flower (diploid) 3	198.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.583
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.567
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.687
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.234
	CNS0095610	Silvery flower (tetraploid) 1	284.745
	CNS0095611	Silvery flower (tetraploid) 2	400.575
	CNS0095612	Silvery flower (tetraploid) 3	140.120
	CNS0095613	Golden flower (tetraploid) 1	188.939
	CNS0095614	Golden flower (tetraploid) 2	267.219
	CNS0095615	Golden flower (tetraploid) 3	229.099
CRA001975	CRR073297	Stem 1	101.570
	CRR073298	Stem 2	85.672
	CRR073299	Stem 3	112.443
	CRR073300	Leaf 1	57.929
	CRR073301	Leaf 2	55.027
	CRR073302	Leaf 3	38.698
	CRR073303	Juvenile bud 1	53.246
	CRR073304	Juvenile bud 2	66.132
	CRR073305	Juvenile bud 3	75.610
	CRR073306	Third green 1	12.793
	CRR073307	Third green 2	14.683
	CRR073308	Third green 3	11.624
	CRR073309	Second white 1	36.948
	CRR073310	Second white 2	29.556
	CRR073311	Second white 3	16.024
	CRR073312	Silver flowering 1	24.362
	CRR073313	Silver flowering 2	21.454
	CRR073314	Silver flowering 3	16.540
	CRR073315	Gold flowering 1	192.744
	CRR073316	Gold flowering 2	189.980
	CRR073317	Gold flowering 3	154.736
	CRR073318	Tawny withering 1	53.659
	CRR073319	Tawny withering 2	57.021
	CRR073320	Tawny withering 3	52.827