Gene detail

Detail information of GWHGAAZE006544

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006449140.1	2.06139E-72	hypothetical protein CICLE_v10015528mg [Citrus clementina]
Swissprot	tr\|Q9SB42\|MDA1_ARATH	3E-29	Mediator-associated protein 1
trEMBL	tr\|V4UDY2\|V4UDY2_9ROSI	8E-73	Uncharacterized protein {ECO:0000313\|EMBL:ESR62380.1}
TAIR10	AT1G61730.1	5E-26	DNA-binding storekeeper protein-related transcriptional regulator

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27569146	27570892	+
GWHAAZE00000002	mRNA	27569146	27570892	+
GWHAAZE00000002	exon	27569146	27569221	+
GWHAAZE00000002	exon	27569452	27569705	+
GWHAAZE00000002	exon	27570083	27570892	+
GWHAAZE00000002	CDS	27569146	27569221	+
GWHAAZE00000002	CDS	27569452	27569705	+
GWHAAZE00000002	CDS	27570083	27570892	+

Transcript Sequence
>GWHTAAZE006552 ATGCCAAATGCATTATCACTGGTTGCACTGCGTGGTTTTTTTCAGAAAGCCGAAATTGCTTTTGGAGGCGTAAAAGAAGAAGATGGATCATCAGATGAACAAGAAGCCTCTGAATCTGAAGAGGAACTAGCCAAAACTTCACCACCTACACCTCCTGCAACCAAAAAGCCCTCTTCTTCAAAAAAACCGGCCACCAATCAAACCCCTTTAAAACCCCAGTCTTCATGCTCCGACGATTCTCAAGCGGAATCGGAATCTGATTCCGACTCTCCGCCGGAAAATACCCCCAAGCCGGTGGAAGGCTTGTCTAAGCCCACGAAAAGCCCTAGATCCGGGGCTGGGGTGAAACGGCCGGCAGACAGTGAAGCGAAGGATTCGAAGAGGGCGAAGAAGATACCGGCTGAGGATGATCAGAAGAAGCAGTTGTTTCAACGATTGTGGAGCGAAGAAGATGAGATTGCAATACTGAAAGGTATAATGGAGTACACATCGAAGAAAGGAGCTGATCCGATGTCCGATATGCATGCCTTCTATGATTTTATTAAGAAATCTATTCATTGTGATGTTACCAAGAATCAATTGGCGGCTAAGGTTCGAAGGTTGAAGAAGAAGTATGAGAATAATGCGAGCAAAGAGAAGGGAAAAGATCGGACATTCTCGAAGCAACATGAACAGAAAGCTTATGATTTGTCCAAAAAGATTTGGGGCAAAAAGGGTAATACCGTAGGAGAAGTTGACGGTAGCACAAAGGTTAATAACGGGTCAGAGAAGAAGAATCAGAATCAAAATCAAAGAGCAAGTAGCATAAAGGTTAATGGGCCTGAGAATAAGAATCAGAAGCCGAAGGTGGAAAGGGTTTCTATGGCTGATGTGAAAAAGGATGATCCGGCGGTGGAGATTGAGCCTAATGGGGCTCCCTCTAGGGCTATTGAATTTGGTGGAAGTATTAGTGATGTTAAATTTCAAGAAGAAATTATGAGGAATGGAGTGGAGCTGATTAAGGGGGATAAGAAGAAGGAGTTGGATGAGAAGTGGAAGAAGCAGAGGGTTCTAGAAGCTGAGGTTTACTTGAAAAGGTTGGATTTGATTCGCGAGCAGATGAATTTGGTATTGGAAGCTCTAAAGTCAGACGGGAATTAG

Network for GWHGAAZE006544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04504.15	DUF573	143	236	1.10E-36

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GeBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.418
	SRR3591706	second leaf	68.236
	SRR3591707	mature leaf	58.519
	SRR3591708	Shoot apex	113.060
	SRR3591709	Stem	86.770
	SRR3591710	White floral bud	77.414
	SRR3591711	White flower	101.598
	SRR3591712	Green floral bud	112.835
	SRR3591713	Yellow flower	63.588
SRP173429	SRR8316895	Juvenile bud stage	60.405
	SRR8316896	Juvenile bud stage	79.257
	SRR8316897	Juvenile bud stage	34.809
	SRR8316894	Third green stage	34.495
	SRR8316900	Third green stage	103.697
	SRR8316901	Third green stage	91.206
	SRR8316898	Complete white stage	28.134
	SRR8316899	Complete white stage	142.526
	SRR8316903	Complete white stage	59.397
	SRR8316902	Silver flowering stage	34.314
	SRR8316904	Silver flowering stage	45.974
	SRR8316905	Silver flowering stage	23.376
	SRR8316906	Gold flowering stage	60.616
	SRR8316907	Gold flowering stage	57.170
	SRR8316908	Gold flowering stage	66.591
SRP132670	SRR6706286	Control	104.531
	SRR6706287	Light intensity 50%	99.067
	SRR6706288	Light intensity 20%	99.635
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	72.677
	CNS0095593	Slightly white alabastrum(diploid) 2	73.827
	CNS0095594	Slightly white alabastrum(diploid) 3	67.590
	CNS0095595	Whole white alabastrum(diploid) 2	73.502
	CNS0095596	Whole white alabastrum(diploid) 3	55.844
	CNS0095597	Whole white alabastrum(diploid) 4	61.860
	CNS0095598	Silvery flower (diploied) 1	85.652
	CNS0095599	Silvery flower (diploied) 2	80.963
	CNS0095600	Silvery flower (diploied) 3	73.171
	CNS0095601	Golden flower (diploid) 1	76.613
	CNS0095602	Golden flower (diploid) 2	64.749
	CNS0095603	Golden flower (diploid) 3	72.930
	CNS0095604	Slightly white alabastrum(tetraploid) 1	92.623
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.360
	CNS0095606	Slightly white alabastrum(tetraploid) 3	184.189
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.856
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.656
	CNS0095610	Silvery flower (tetraploid) 1	74.562
	CNS0095611	Silvery flower (tetraploid) 2	69.109
	CNS0095612	Silvery flower (tetraploid) 3	58.417
	CNS0095613	Golden flower (tetraploid) 1	47.322
	CNS0095614	Golden flower (tetraploid) 2	61.104
	CNS0095615	Golden flower (tetraploid) 3	50.806
CRA001975	CRR073297	Stem 1	82.369
	CRR073298	Stem 2	90.723
	CRR073299	Stem 3	79.723
	CRR073300	Leaf 1	89.786
	CRR073301	Leaf 2	89.792
	CRR073302	Leaf 3	65.517
	CRR073303	Juvenile bud 1	82.163
	CRR073304	Juvenile bud 2	58.734
	CRR073305	Juvenile bud 3	88.326
	CRR073306	Third green 1	20.437
	CRR073307	Third green 2	17.844
	CRR073308	Third green 3	25.835
	CRR073309	Second white 1	30.311
	CRR073310	Second white 2	28.207
	CRR073311	Second white 3	25.318
	CRR073312	Silver flowering 1	20.653
	CRR073313	Silver flowering 2	21.286
	CRR073314	Silver flowering 3	16.184
	CRR073315	Gold flowering 1	47.710
	CRR073316	Gold flowering 2	56.718
	CRR073317	Gold flowering 3	43.491
	CRR073318	Tawny withering 1	71.768
	CRR073319	Tawny withering 2	57.146
	CRR073320	Tawny withering 3	69.270