Gene detail

Detail information of GWHGAAZE006571

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010277911.1	2.307E-157	PREDICTED: transcription factor MYB39 [Nelumbo nucifera]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	8E-74	Transcription factor MYB39
trEMBL	tr\|F6I738\|F6I738_VITVI	9E-158	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62756.1}
TAIR10	AT4G21440.1	3E-81	MYB-like 102

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27934746	27936170	-
GWHAAZE00000002	mRNA	27934746	27936170	-
GWHAAZE00000002	exon	27934746	27935529	-
GWHAAZE00000002	exon	27935746	27935875	-
GWHAAZE00000002	exon	27936035	27936170	-
GWHAAZE00000002	CDS	27936035	27936170	-
GWHAAZE00000002	CDS	27935746	27935875	-
GWHAAZE00000002	CDS	27934746	27935529	-

Transcript Sequence
>GWHTAAZE006579 ATGGGGAGAACACCTTGTTGTGATAATAAGAATGGGCTGAAGAAGGGTCCATGGACCCCAGAAGAGGATCAAAAGCTTCTTCATTATATTCAAAAGCATGGTTATGGCAACTGGAGAACTCTTCCCAAAAATGCTGGGCTTGAAAGGTGCGGAAAGAGTTGCCGTCTTCGATGGACCAACTATTTAAGGCCTGATATCAAAAGAGGTCGATTCTCTCCCGAAGAGGAAGACACAATAATTCACCTACATAGCGTTTTGGGAAATAAATGGTCGGCTATTGCAGCTCGTTTGCCCGGAAGAACCGATAACGAAATCAAGAATTACTGGAACACTCACATTAGAAAAAAACTTCTTCGAATGGGAATTGATCCAGTGACTCACAATCCACGTCTCGATCTTCTTGACCTATCATCTATTTTAAGCTCATCTCTCTATAATTCATCTCAAAATCAAATGGATTTTTCAAGGCTGTTAGGGATTCAATCCATGGTTAACCCAGAATTCATAAAGCTAGCCACCTCTCTCTTATCGTCCCACCGTGAAAATCCCAATTTCCTTCTACAAAATGTTCAACAAAATCAAATTTCTAGTCCCGAAATTCAAAACCAATTCTCACAATTAGTCCAACCTAGCCAATTTCAATCACCAGATCAAGAAATTCAACAATTTGTTCCATTTTCTAACGAAGCCCAACTCATGGAACCCAAAGCGGAGCAGTTCCTGTCTAATTTTACCGATTTTAACTCGCAAAGTGGCCAGTTAAATGATTGGCAAAGCAATGAAATGGCCTCAAGCGCATCTGAAGAATATGTGCCTTTACAAAATTACGATTACTATGGCTCGGATCATTTAAATTTGCAATCTGAAAATGGTAATAACTTCGGCTTTGGATTGTCGAATTTATCGACCCCTGCATCAAGTCCGACTCCTTTGAATTCAAATTCGACGAATATCAATTGCAGCAGTACGGAAGATGAGAGAGAAAGCTACTGTAGCAGCATGATGAAGTTTGAAATCCCTGATTTCTTGGATTTTAATGAGCTCGTGTAA

Network for GWHGAAZE006571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	15	62	5.20E-16
PF00249.32	Myb_DNA-binding	68	112	1.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.131
	SRR3591706	second leaf	5.173
	SRR3591707	mature leaf	7.016
	SRR3591708	Shoot apex	1.128
	SRR3591709	Stem	0.319
	SRR3591710	White floral bud	2.526
	SRR3591711	White flower	2.118
	SRR3591712	Green floral bud	0.783
	SRR3591713	Yellow flower	2.812
SRP173429	SRR8316895	Juvenile bud stage	0.091
	SRR8316896	Juvenile bud stage	0.496
	SRR8316897	Juvenile bud stage	0.152
	SRR8316894	Third green stage	0.129
	SRR8316900	Third green stage	0.158
	SRR8316901	Third green stage	0.225
	SRR8316898	Complete white stage	0.133
	SRR8316899	Complete white stage	0.225
	SRR8316903	Complete white stage	0.508
	SRR8316902	Silver flowering stage	1.052
	SRR8316904	Silver flowering stage	1.091
	SRR8316905	Silver flowering stage	0.455
	SRR8316906	Gold flowering stage	4.166
	SRR8316907	Gold flowering stage	2.932
	SRR8316908	Gold flowering stage	5.800
SRP132670	SRR6706286	Control	0.110
	SRR6706287	Light intensity 50%	0.086
	SRR6706288	Light intensity 20%	0.101
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.084
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.861
	CNS0095595	Whole white alabastrum(diploid) 2	0.106
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.073
	CNS0095598	Silvery flower (diploied) 1	0.161
	CNS0095599	Silvery flower (diploied) 2	0.200
	CNS0095600	Silvery flower (diploied) 3	0.779
	CNS0095601	Golden flower (diploid) 1	1.602
	CNS0095602	Golden flower (diploid) 2	0.973
	CNS0095603	Golden flower (diploid) 3	0.844
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.069
	CNS0095610	Silvery flower (tetraploid) 1	0.351
	CNS0095611	Silvery flower (tetraploid) 2	0.728
	CNS0095612	Silvery flower (tetraploid) 3	1.398
	CNS0095613	Golden flower (tetraploid) 1	0.193
	CNS0095614	Golden flower (tetraploid) 2	0.215
	CNS0095615	Golden flower (tetraploid) 3	0.423
CRA001975	CRR073297	Stem 1	0.997
	CRR073298	Stem 2	0.277
	CRR073299	Stem 3	0.130
	CRR073300	Leaf 1	0.193
	CRR073301	Leaf 2	0.848
	CRR073302	Leaf 3	0.192
	CRR073303	Juvenile bud 1	0.044
	CRR073304	Juvenile bud 2	0.310
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.897
	CRR073307	Third green 2	0.297
	CRR073308	Third green 3	0.160
	CRR073309	Second white 1	3.067
	CRR073310	Second white 2	3.957
	CRR073311	Second white 3	0.988
	CRR073312	Silver flowering 1	3.178
	CRR073313	Silver flowering 2	2.862
	CRR073314	Silver flowering 3	0.769
	CRR073315	Gold flowering 1	3.786
	CRR073316	Gold flowering 2	8.748
	CRR073317	Gold flowering 3	8.379
	CRR073318	Tawny withering 1	3.532
	CRR073319	Tawny withering 2	11.713
	CRR073320	Tawny withering 3	5.234