Gene detail

Detail information of GWHGAAZE006574

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG02601.1	1.6065E-147	Vesicle-associated 4-2 -like protein [Gossypium arboreum]
Swissprot	tr\|Q8VYN2\|VAP42_ARATH	4E-131	Vesicle-associated protein 4-2
trEMBL	tr\|M1C1A3\|M1C1A3_SOLTU	4E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400057560}
TAIR10	AT4G21450.1	3E-76	PapD-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27957553	27962341	+
GWHAAZE00000002	mRNA	27957553	27962341	+
GWHAAZE00000002	exon	27957553	27957826	+
GWHAAZE00000002	exon	27959710	27959780	+
GWHAAZE00000002	exon	27960661	27960742	+
GWHAAZE00000002	exon	27960907	27961025	+
GWHAAZE00000002	exon	27961379	27961456	+
GWHAAZE00000002	exon	27961614	27961733	+
GWHAAZE00000002	exon	27961834	27962341	+
GWHAAZE00000002	CDS	27957553	27957826	+
GWHAAZE00000002	CDS	27959710	27959780	+
GWHAAZE00000002	CDS	27960661	27960742	+
GWHAAZE00000002	CDS	27960907	27961025	+
GWHAAZE00000002	CDS	27961379	27961456	+
GWHAAZE00000002	CDS	27961614	27961733	+
GWHAAZE00000002	CDS	27961834	27961896	+
GWHAAZE00000002	three_prime_UTR	27961897	27962341	+

Transcript Sequence
>GWHTAAZE006582 ATGGCAATCGCTGACGAGAAGTCTCCATCGGACGGTAAAGTCTGGGGATTGTTTAAGCTTCCGTTTCGAAGCACCGGAAATCAGCATACTACGACGTCGTCATCGTCGCACAGCGCTCATCATAATCAACAGCTTCACAGTCAGAGCAATCTACAGATGGATGGATCGAATGGTCACACCAACAGTTCCAGCTCGGTTTCTACCGTTGCTAGATCTCTGCTTCCAACACGACGTCGTCTTCGTCTCGATCCGTCAAATAAGCTCTACTTTCCTTATGAACCTGGTAAGCAAGTCCAAAGTGCTATTCGTATTAAAAATACAAGCAAGTCTCATGTAGCCTTCAAGTTTCAAACAACTGCACCAAAAAGCTGCTTCATGCGTCCTCCGGGGGCTATACTTGCACCTGGCGAAAGTCTCATAGCAACTGTATTCAAATTTGTGGAGGTTCCTGAGAACAATGAAAAACCAATGGATCAGAAGAGTAAACTGAAATTCAAAATCATGAGCCTGAAGGTTAAAGGACTAATGGACTACGTTCCCGAGCTGTTTGAGGAGCAGAAGGATCAAGTGGCTGTAGAACAAATATTGCGGGTTATTTTTCTAGATGCCGAGCGCCCTAGCCCTGCGCTGGAAAAACTGAAGCGGCAGTTAGCTGAAGCAGAGGCCGCTCTTGAGGCCCGTAAGAAGCCTCTGGAAGACACGGGTCCCAAGATTATCGGTGAAGGACTCGTCATAGATGAATGGAAAGAACGAAGAGAAAGATATCTGGCTCGACAGCAGGTCGAAGGTGTAGTGGATTCGGTATAAATCTGTTGTTTGTATTTCGACTTTTGGAGTTTTAATTTGGATGGATATTTCTTTATATATATATATGCTGTTGTTGATGGGTGTATCATTTTCCATGTTTTATCTTGTGTTCACAATTTGAAGGATCTTAACGGTTTGGCAGGAGAAAAGATTTACACATCTTGTTGATGTAAAAACTGTGAGAATCTCAAAACTTCTGCTAGCTGTAGATAATTTGTGAGCTTTATTTTCATTTCTTTCTTTTGAATGAGAGAAATAGCGGTCTCATTTGGGATCCAAGGTGCTAATGAGTTCCATCTATCTTTGTTGTCGTGGCTGTGGGTTACTATTCCTTTCCAAATTCTCATTGTTTGACTTTTGCACTTTTGAAGTAAAAGTTTATTTCTTGTATTATATTAGTAAAAATTTATTTGAATTTAATCAGTTGTCAAGAGTGAAATTTATT

Network for GWHGAAZE006574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0036

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00635.27	Motile_Sperm	80	191	4.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	106.946
	SRR3591706	second leaf	49.033
	SRR3591707	mature leaf	56.808
	SRR3591708	Shoot apex	77.627
	SRR3591709	Stem	116.419
	SRR3591710	White floral bud	116.326
	SRR3591711	White flower	118.335
	SRR3591712	Green floral bud	87.611
	SRR3591713	Yellow flower	119.462
SRP173429	SRR8316895	Juvenile bud stage	50.454
	SRR8316896	Juvenile bud stage	60.866
	SRR8316897	Juvenile bud stage	33.803
	SRR8316894	Third green stage	24.576
	SRR8316900	Third green stage	71.324
	SRR8316901	Third green stage	69.051
	SRR8316898	Complete white stage	50.214
	SRR8316899	Complete white stage	143.385
	SRR8316903	Complete white stage	67.794
	SRR8316902	Silver flowering stage	37.060
	SRR8316904	Silver flowering stage	49.401
	SRR8316905	Silver flowering stage	23.174
	SRR8316906	Gold flowering stage	69.303
	SRR8316907	Gold flowering stage	67.033
	SRR8316908	Gold flowering stage	72.034
SRP132670	SRR6706286	Control	85.757
	SRR6706287	Light intensity 50%	83.644
	SRR6706288	Light intensity 20%	88.429
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	68.425
	CNS0095593	Slightly white alabastrum(diploid) 2	77.420
	CNS0095594	Slightly white alabastrum(diploid) 3	63.326
	CNS0095595	Whole white alabastrum(diploid) 2	54.502
	CNS0095596	Whole white alabastrum(diploid) 3	53.213
	CNS0095597	Whole white alabastrum(diploid) 4	60.659
	CNS0095598	Silvery flower (diploied) 1	96.172
	CNS0095599	Silvery flower (diploied) 2	75.773
	CNS0095600	Silvery flower (diploied) 3	109.338
	CNS0095601	Golden flower (diploid) 1	86.077
	CNS0095602	Golden flower (diploid) 2	117.945
	CNS0095603	Golden flower (diploid) 3	114.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	58.664
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.027
	CNS0095606	Slightly white alabastrum(tetraploid) 3	103.793
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.688
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.938
	CNS0095610	Silvery flower (tetraploid) 1	102.966
	CNS0095611	Silvery flower (tetraploid) 2	113.830
	CNS0095612	Silvery flower (tetraploid) 3	91.367
	CNS0095613	Golden flower (tetraploid) 1	91.604
	CNS0095614	Golden flower (tetraploid) 2	101.094
	CNS0095615	Golden flower (tetraploid) 3	107.622
CRA001975	CRR073297	Stem 1	98.521
	CRR073298	Stem 2	90.021
	CRR073299	Stem 3	105.859
	CRR073300	Leaf 1	108.705
	CRR073301	Leaf 2	115.067
	CRR073302	Leaf 3	127.655
	CRR073303	Juvenile bud 1	133.845
	CRR073304	Juvenile bud 2	111.189
	CRR073305	Juvenile bud 3	128.204
	CRR073306	Third green 1	91.493
	CRR073307	Third green 2	106.837
	CRR073308	Third green 3	94.790
	CRR073309	Second white 1	60.040
	CRR073310	Second white 2	47.314
	CRR073311	Second white 3	43.389
	CRR073312	Silver flowering 1	40.923
	CRR073313	Silver flowering 2	38.978
	CRR073314	Silver flowering 3	37.233
	CRR073315	Gold flowering 1	64.854
	CRR073316	Gold flowering 2	87.062
	CRR073317	Gold flowering 3	54.121
	CRR073318	Tawny withering 1	154.339
	CRR073319	Tawny withering 2	122.141
	CRR073320	Tawny withering 3	158.527