Detail information of GWHGAAZE006578


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011043301.10PREDICTED: telomerase Cajal body protein 1 isoform X1 [Populus euphratica]
Swissprottr|Q8H0T9|KTNB1_ARATH0.000000001Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|A0A067JLJ6|A0A067JLJ6_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP20885.1}
TAIR10AT4G21520.17E-166Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2799962528008427-
GWHAAZE00000002mRNA2799962528008427-
GWHAAZE00000002exon2800812928008427-
GWHAAZE00000002exon2800435028004412-
GWHAAZE00000002exon2800349528003550-
GWHAAZE00000002exon2800330828003388-
GWHAAZE00000002exon2800288028002953-
GWHAAZE00000002exon2800270328002785-
GWHAAZE00000002exon2800198128002087-
GWHAAZE00000002exon2800160228001744-
GWHAAZE00000002exon2800147128001518-
GWHAAZE00000002exon2800131328001365-
GWHAAZE00000002exon2800103028001114-
GWHAAZE00000002exon2800073628000802-
GWHAAZE00000002exon2800052528000635-
GWHAAZE00000002exon2799962527999758-
GWHAAZE00000002CDS2800812928008427-
GWHAAZE00000002CDS2800435028004412-
GWHAAZE00000002CDS2800349528003550-
GWHAAZE00000002CDS2800330828003388-
GWHAAZE00000002CDS2800288028002953-
GWHAAZE00000002CDS2800270328002785-
GWHAAZE00000002CDS2800198128002087-
GWHAAZE00000002CDS2800160228001744-
GWHAAZE00000002CDS2800147128001518-
GWHAAZE00000002CDS2800131328001365-
GWHAAZE00000002CDS2800103028001114-
GWHAAZE00000002CDS2800073628000802-
GWHAAZE00000002CDS2800052528000635-
GWHAAZE00000002CDS2799962527999758-
Transcript Sequence

Network for GWHGAAZE006578

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402883263.50E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.995
SRR3591706second leaf10.388
SRR3591707mature leaf11.625
SRR3591708Shoot apex18.374
SRR3591709Stem18.450
SRR3591710White floral bud11.898
SRR3591711White flower11.213
SRR3591712Green floral bud12.960
SRR3591713Yellow flower9.580
SRP173429 SRR8316895Juvenile bud stage 5.571
SRR8316896Juvenile bud stage 8.603
SRR8316897Juvenile bud stage 5.899
SRR8316894Third green stage 3.358
SRR8316900Third green stage 7.651
SRR8316901Third green stage 6.542
SRR8316898Complete white stage 0.654
SRR8316899Complete white stage 8.979
SRR8316903Complete white stage 2.101
SRR8316902Silver flowering stage0.630
SRR8316904Silver flowering stage1.005
SRR8316905Silver flowering stage0.544
SRR8316906Gold flowering stage 1.319
SRR8316907Gold flowering stage 0.858
SRR8316908Gold flowering stage 2.977
SRP132670SRR6706286Control11.726
SRR6706287Light intensity 50%11.552
SRR6706288Light intensity 20%12.136
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.896
CNS0095593Slightly white alabastrum(diploid) 28.528
CNS0095594Slightly white alabastrum(diploid) 36.867
CNS0095595Whole white alabastrum(diploid) 27.406
CNS0095596Whole white alabastrum(diploid) 34.498
CNS0095597Whole white alabastrum(diploid) 46.672
CNS0095598Silvery flower (diploied) 17.188
CNS0095599Silvery flower (diploied) 24.872
CNS0095600Silvery flower (diploied) 33.862
CNS0095601Golden flower (diploid) 17.170
CNS0095602Golden flower (diploid) 25.184
CNS0095603Golden flower (diploid) 34.186
CNS0095604Slightly white alabastrum(tetraploid) 16.038
CNS0095605Slightly white alabastrum(tetraploid) 27.704
CNS0095606Slightly white alabastrum(tetraploid) 313.289
CNS0095607Whole white alabastrum(tetraploid) 14.539
CNS0095608Whole white alabastrum(tetraploid) 24.098
CNS0095609Whole white alabastrum(tetraploid) 38.777
CNS0095610Silvery flower (tetraploid) 17.084
CNS0095611Silvery flower (tetraploid) 28.471
CNS0095612Silvery flower (tetraploid) 34.339
CNS0095613Golden flower (tetraploid) 13.355
CNS0095614Golden flower (tetraploid) 24.440
CNS0095615Golden flower (tetraploid) 31.673
CRA001975CRR073297Stem 16.324
CRR073298Stem 26.568
CRR073299Stem 37.555
CRR073300Leaf 16.580
CRR073301Leaf 26.710
CRR073302Leaf 36.724
CRR073303Juvenile bud 15.869
CRR073304Juvenile bud 25.208
CRR073305Juvenile bud 35.986
CRR073306Third green 10.291
CRR073307Third green 20.292
CRR073308Third green 30.228
CRR073309Second white 10.378
CRR073310Second white 20.795
CRR073311Second white 30.379
CRR073312Silver flowering 10.618
CRR073313Silver flowering 20.659
CRR073314Silver flowering 30.319
CRR073315Gold flowering 14.942
CRR073316Gold flowering 26.340
CRR073317Gold flowering 34.192
CRR073318Tawny withering 18.708
CRR073319Tawny withering 29.060
CRR073320Tawny withering 37.990