Gene detail

Detail information of GWHGAAZE006590

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU43399.1	2.9536E-158	hypothetical protein MIMGU_mgv1a010567mg [Erythranthe guttata]
Swissprot	tr\|Q9M5P2\|SCAM3_ARATH	2E-144	Secretory carrier-associated membrane protein 3
trEMBL	tr\|A0A022RTL4\|A0A022RTL4_ERYGU	1E-158	Uncharacterized protein {ECO:0000313\|EMBL:EYU43399.1}
TAIR10	AT1G61250.1	5E-99	secretory carrier 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28284221	28289677	-
GWHAAZE00000002	mRNA	28284221	28289677	-
GWHAAZE00000002	exon	28284221	28284307	-
GWHAAZE00000002	exon	28284734	28284782	-
GWHAAZE00000002	exon	28285158	28285225	-
GWHAAZE00000002	exon	28285315	28285360	-
GWHAAZE00000002	exon	28285891	28285984	-
GWHAAZE00000002	exon	28286106	28286168	-
GWHAAZE00000002	exon	28286853	28286975	-
GWHAAZE00000002	exon	28287230	28287263	-
GWHAAZE00000002	exon	28287891	28287953	-
GWHAAZE00000002	exon	28288032	28288142	-
GWHAAZE00000002	exon	28289618	28289677	-
GWHAAZE00000002	CDS	28289618	28289677	-
GWHAAZE00000002	CDS	28288032	28288142	-
GWHAAZE00000002	CDS	28287891	28287953	-
GWHAAZE00000002	CDS	28287230	28287263	-
GWHAAZE00000002	CDS	28286853	28286975	-
GWHAAZE00000002	CDS	28286106	28286168	-
GWHAAZE00000002	CDS	28285891	28285984	-
GWHAAZE00000002	CDS	28285315	28285360	-
GWHAAZE00000002	CDS	28285158	28285225	-
GWHAAZE00000002	CDS	28284734	28284782	-
GWHAAZE00000002	CDS	28284221	28284307	-

Transcript Sequence
>GWHTAAZE006598 ATGGCTGGCCGTTATGATCGTAACCCTTTCGCCGAAGAAGAAGAAGTCAATCCCTTTGCTCCAGGGAGTGTACCTGCTGCCACAAACTCAAGGCTTTCACCTCTTCCTCATGAACCTGCAGATTTCTATGACCGTAATGTTTCCGTTGATATTCCCCTTGATTCAACTGCGGATATAAAGAAGAAAGAGAAAGAGCTGCAAGCCAAGGAGGCTGAATTGAGAAAGAGGGAACAGGAAGTAAGGCGGAAAGAAGAGGCTGCTTCACGAGCTGGTATTGTTCTTGAGGAGAAAAATTGGCCTCCGTTTTTCCCAATAATCCATCATGATATTGCAAATGAAATACCGATTCATCTACAGAAACTGCAATATGTTGCATTTACAACATACTTAGGACTAGTACTTTGCCTTCTGTGGAACATTATTGCCACTACTACAGCTTGGATTAAAGGAGAAGATGCAAAAATCTGGTTTCTTGCTCTTATCTACTTCATAGCAGGGGTTCCAGGAGGCTATGTGTTGTGGTATCGACCACTCTATCGTGCTTTTAGGACTGAAAGTGCCTTCAAGTTTAGTTGGTTTTTCCTGTTTTATTTGCTTCACATCGGCTTCTCCATCTTTGCTGCAGTTGCTCCTCCTATAGTTTTCAGAGGAAAATCTCTCGCAGGTATTCTTCCCGCTGTAGATCTCATAGGCAAGCATGCTTTGGTGGGGCAAGTATACATGTATTTCCGAGGCAGTGGCAAAGCGGCAGAAATGAAGAAAGAAGCTGCAAGAGGAGCTTTGAGAGCTGCAATATGA

Network for GWHGAAZE006590

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0290

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04144.14	SCAMP	96	241	6.70E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.092
	SRR3591706	second leaf	23.527
	SRR3591707	mature leaf	20.195
	SRR3591708	Shoot apex	38.248
	SRR3591709	Stem	57.730
	SRR3591710	White floral bud	46.380
	SRR3591711	White flower	46.384
	SRR3591712	Green floral bud	55.852
	SRR3591713	Yellow flower	38.392
SRP173429	SRR8316895	Juvenile bud stage	24.014
	SRR8316896	Juvenile bud stage	35.458
	SRR8316897	Juvenile bud stage	21.788
	SRR8316894	Third green stage	15.780
	SRR8316900	Third green stage	44.752
	SRR8316901	Third green stage	37.784
	SRR8316898	Complete white stage	17.130
	SRR8316899	Complete white stage	68.924
	SRR8316903	Complete white stage	29.433
	SRR8316902	Silver flowering stage	15.130
	SRR8316904	Silver flowering stage	22.472
	SRR8316905	Silver flowering stage	10.732
	SRR8316906	Gold flowering stage	30.277
	SRR8316907	Gold flowering stage	27.971
	SRR8316908	Gold flowering stage	32.539
SRP132670	SRR6706286	Control	45.080
	SRR6706287	Light intensity 50%	46.742
	SRR6706288	Light intensity 20%	52.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.986
	CNS0095593	Slightly white alabastrum(diploid) 2	31.234
	CNS0095594	Slightly white alabastrum(diploid) 3	28.019
	CNS0095595	Whole white alabastrum(diploid) 2	25.646
	CNS0095596	Whole white alabastrum(diploid) 3	24.037
	CNS0095597	Whole white alabastrum(diploid) 4	24.943
	CNS0095598	Silvery flower (diploied) 1	43.780
	CNS0095599	Silvery flower (diploied) 2	38.668
	CNS0095600	Silvery flower (diploied) 3	47.351
	CNS0095601	Golden flower (diploid) 1	33.949
	CNS0095602	Golden flower (diploid) 2	48.021
	CNS0095603	Golden flower (diploid) 3	48.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.304
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.398
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.308
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.927
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.553
	CNS0095610	Silvery flower (tetraploid) 1	48.958
	CNS0095611	Silvery flower (tetraploid) 2	57.602
	CNS0095612	Silvery flower (tetraploid) 3	43.976
	CNS0095613	Golden flower (tetraploid) 1	28.847
	CNS0095614	Golden flower (tetraploid) 2	42.205
	CNS0095615	Golden flower (tetraploid) 3	30.672
CRA001975	CRR073297	Stem 1	37.305
	CRR073298	Stem 2	40.172
	CRR073299	Stem 3	49.861
	CRR073300	Leaf 1	42.608
	CRR073301	Leaf 2	45.904
	CRR073302	Leaf 3	47.923
	CRR073303	Juvenile bud 1	49.404
	CRR073304	Juvenile bud 2	44.035
	CRR073305	Juvenile bud 3	59.344
	CRR073306	Third green 1	13.548
	CRR073307	Third green 2	16.660
	CRR073308	Third green 3	16.278
	CRR073309	Second white 1	11.445
	CRR073310	Second white 2	16.030
	CRR073311	Second white 3	12.600
	CRR073312	Silver flowering 1	9.420
	CRR073313	Silver flowering 2	8.810
	CRR073314	Silver flowering 3	8.451
	CRR073315	Gold flowering 1	26.451
	CRR073316	Gold flowering 2	38.557
	CRR073317	Gold flowering 3	28.645
	CRR073318	Tawny withering 1	53.509
	CRR073319	Tawny withering 2	52.905
	CRR073320	Tawny withering 3	55.382