Gene detail

Detail information of GWHGAAZE006592

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647331.1	0	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Vitis vinifera]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	4E-139	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|A0A068TTI3\|A0A068TTI3_COFCA	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256\|HAMAP-Rule:MF_03022}
TAIR10	AT1G61210.2	2E-154	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28315603	28325660	-
GWHAAZE00000002	mRNA	28315603	28325660	-
GWHAAZE00000002	exon	28315603	28315689	-
GWHAAZE00000002	exon	28316103	28316327	-
GWHAAZE00000002	exon	28317633	28317663	-
GWHAAZE00000002	exon	28318202	28318270	-
GWHAAZE00000002	exon	28318386	28318502	-
GWHAAZE00000002	exon	28318868	28318980	-
GWHAAZE00000002	exon	28319083	28319157	-
GWHAAZE00000002	exon	28319789	28319925	-
GWHAAZE00000002	exon	28320022	28320078	-
GWHAAZE00000002	exon	28320277	28320780	-
GWHAAZE00000002	exon	28320954	28321128	-
GWHAAZE00000002	exon	28321263	28321406	-
GWHAAZE00000002	exon	28323713	28323783	-
GWHAAZE00000002	exon	28324275	28324377	-
GWHAAZE00000002	exon	28324451	28324677	-
GWHAAZE00000002	exon	28324945	28325062	-
GWHAAZE00000002	exon	28325520	28325660	-
GWHAAZE00000002	CDS	28325520	28325660	-
GWHAAZE00000002	CDS	28324945	28325062	-
GWHAAZE00000002	CDS	28324451	28324677	-
GWHAAZE00000002	CDS	28324275	28324377	-
GWHAAZE00000002	CDS	28323713	28323783	-
GWHAAZE00000002	CDS	28321263	28321406	-
GWHAAZE00000002	CDS	28320954	28321128	-
GWHAAZE00000002	CDS	28320277	28320780	-
GWHAAZE00000002	CDS	28320022	28320078	-
GWHAAZE00000002	CDS	28319789	28319925	-
GWHAAZE00000002	CDS	28319083	28319157	-
GWHAAZE00000002	CDS	28318868	28318980	-
GWHAAZE00000002	CDS	28318386	28318502	-
GWHAAZE00000002	CDS	28318202	28318270	-
GWHAAZE00000002	CDS	28317633	28317663	-
GWHAAZE00000002	CDS	28316103	28316327	-
GWHAAZE00000002	CDS	28315603	28315689	-

Transcript Sequence
>GWHTAAZE006600 ATGAATGTAGAGGAGTTTGTGGCACATCCAGGGAGTGTGAACTGTTTAAGTATTGGGAAGAAGACTTGTAGGCTTTTTATTACTGGTGGAGATGATCAAAGAGTTAATCTCTGGTCAATTGGCAAACCAACATCTTTGATGAGCTTGCGCGGTCACACAAGTGGAGTAGAATCTGTTGCTTTTGATACACCGGAGGTTTTAGTGGTTGCAGGAGCTTCTAACGGTGTGATAAAGCTGTGGGATTTGGAAGAAACTAAGCTGATTCGCACTCTTACTGGACACAGATCCAGTTGCACTGCTGTTGAATTCCATCCATTTGGTGAGTTTTTTGCATCTGGTTCAATGGATACTAATCTAAAGATCTGGGATATCAGAAAGAAAGAATGCATCCACACATACGAAGGTCACACTCGAGGAATTAGTACTATTAGATTCACACCTGATGGCCGCTGGGTAGTCTCTGGTGGATTTGATAACGTTGTAAAGATATGGGACCTAACTGCTGGAAAGCTATTGCACGATTTCAAGTTCCATGAAGGACATATTCGATCTATAGATTTTCATCCCCTTGAGTTTCTTCTGGCAACAGGTTCAGCAGATAAAACTGTAAAATTTTGGGATTTGGAAACGTTTGAGCTGATTGGATCCTCCAGACCCGAGGTTTATTCATGGGAGCCTGTGGTTTGCCATGATACTGTTGACATGGGATGGTCAACTGTGGGTGACCTCTGTATCCATGACGGGAAACTTTTGGGGTGCTCATATTATCAGAACTCTGTTGGAGTTTGGGCTGCAGATATTTCGCTTATTGAACCATATGAAGCTAGTTCAGTACCTAAGAGAGTTACTTACTCTGAGCAGAAACACAATCTCCAGGGTAGTCCCCTAACAAGAGTAGGGAGCCATGGATCTTCTCCAAGTTTGCGTTGCATATCTCCAGATAATGATACTAAAGAAATAAAGAATATTTATGTGGACAGTGGAAAACCTGCCACTTTAAGAAAAAGCATGTCATCAAATTCTCTAAAGGTTGTATCGCCATCCAATCCCAAAGAAATCAATAAATTGACTACTCAAAAGCGGGTGCCTGCAATTAGCTTGCATGCAAAAGCCATTGGGCAAGCCCTTAGTAAATCCTTTGTAGCTCCTAATGTTGTGCCTAGAGAAGAGAGCCGTGACAGAAAAGACTTGGCCAAATCAAGAAGAGAATCTGTTACCAGTGCAAAAGCCAAGCCAGCTCATATACGGAGACCTTCAGTTACCAAATTAGATGTGGAAAGATTATCGAGGACAGTTGATTCTTTATCTTTTGACTATATAAAGAGTGATTTAGACAGTACGGTGAGTCCAAACGTCCATAGCAAGCTTTCTGCAGGTGGTGATAATAAAGAATCTTCTAAAGAAAGACTTTCAAACATCACAAGTGTCGCTGAGAAGTTTGGAAAAGTTATATCGGCGAGGACACCCTCTACTCAAGACAACTGTGCTGAGACTCTTGATTCAAGCATGGGGATGAAATCTGTTAAATATATCAATGGAGTGGCCGTTGTGGAAGGAAGAACACGGAGCCTAGTTGAAAGGTTTGAAAAGCGAGAAACATTTAATACTGATGAAGCTCAAACACCTGACACAATCCCTCATGAAATGCAGGAGGCAGTTAAAGCATCAGCCATGCTGGTTGTGAGACATTTTTGGGAACGGAATGACATCAAAGGTGCTATAAATGCATTGTTGAAGTTGCCTGATCATTCTGTACAAGCAGATGTAGTGAGTGGTATCGTGGAAAAATTGGATATTTTTACACTAGATCTGTTTTCTTGTTTGTTGCCTGTGCTTCTGGGCTTACTGGATAGCAAGATAGAAAGGCATGTCAATGTTTCATTGGAGCTTCTACTAAAGCTTGTAGCGGTCTTTGGACCAACAATCCACTCGACCATTTCAGCGCCCCCATCTATTGGTGTCGATCTTCAGGCAGAGCAAAGACTAGAATGCTGCAATCAGTGCTTTATACTGCTCCAGAAGGTCCAAAAAACTCTTCCTACACTTATCAGGCATTCATATTTTTCCTTGCCTTATACTCTGGGCTCAGAGACGGTTAATTCGCTAACGTCGGTTGTTCCTGGGATGTGGAATGAAGTAAAGATTAGAAATTTATTTCCATCAAGCGAGGCGGAGGCCATCCTTGGTATAGTTCTTGCTAGTAGAAATAATCCCGACTGCCTAATTTGGCATTTTTCTTCAGATGGTGAATATACTACCAAGAGTGGCTACAGATTATTGAAAGGATTGGCAAACCAAGATCTTGAGGTCCAGTCCCCTCTTCCTGTTAATTGGTCTCCTCCTCCGTCAGGTATGTTCAAAGCAAATTTTGCTGCTGCTACGTTTGATGAGTAG

Network for GWHGAAZE006592

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	5	39	0.093
PF00400.33	WD40	46	81	0.00022
PF00400.33	WD40	86	123	1.30E-08
PF00400.33	WD40	128	165	5.50E-10
PF00400.33	WD40	169	207	2.30E-06
PF13925.7	Katanin_con80	558	685	1.10E-38

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051013	biological_process	microtubule severing
GO:0008352	cellular_component	katanin complex
GO:0008017	molecular_function	microtubule binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.567
	SRR3591706	second leaf	38.622
	SRR3591707	mature leaf	37.150
	SRR3591708	Shoot apex	16.013
	SRR3591709	Stem	32.026
	SRR3591710	White floral bud	10.493
	SRR3591711	White flower	9.320
	SRR3591712	Green floral bud	12.087
	SRR3591713	Yellow flower	5.381
SRP173429	SRR8316895	Juvenile bud stage	11.836
	SRR8316896	Juvenile bud stage	17.764
	SRR8316897	Juvenile bud stage	6.233
	SRR8316894	Third green stage	6.702
	SRR8316900	Third green stage	15.498
	SRR8316901	Third green stage	16.166
	SRR8316898	Complete white stage	5.160
	SRR8316899	Complete white stage	15.934
	SRR8316903	Complete white stage	8.496
	SRR8316902	Silver flowering stage	2.903
	SRR8316904	Silver flowering stage	4.526
	SRR8316905	Silver flowering stage	1.801
	SRR8316906	Gold flowering stage	4.775
	SRR8316907	Gold flowering stage	3.491
	SRR8316908	Gold flowering stage	4.702
SRP132670	SRR6706286	Control	9.051
	SRR6706287	Light intensity 50%	10.607
	SRR6706288	Light intensity 20%	11.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.006
	CNS0095593	Slightly white alabastrum(diploid) 2	6.295
	CNS0095594	Slightly white alabastrum(diploid) 3	5.805
	CNS0095595	Whole white alabastrum(diploid) 2	5.183
	CNS0095596	Whole white alabastrum(diploid) 3	5.191
	CNS0095597	Whole white alabastrum(diploid) 4	5.224
	CNS0095598	Silvery flower (diploied) 1	6.152
	CNS0095599	Silvery flower (diploied) 2	6.087
	CNS0095600	Silvery flower (diploied) 3	5.456
	CNS0095601	Golden flower (diploid) 1	5.692
	CNS0095602	Golden flower (diploid) 2	6.236
	CNS0095603	Golden flower (diploid) 3	5.928
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.864
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.275
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.091
	CNS0095610	Silvery flower (tetraploid) 1	6.540
	CNS0095611	Silvery flower (tetraploid) 2	4.602
	CNS0095612	Silvery flower (tetraploid) 3	1.888
	CNS0095613	Golden flower (tetraploid) 1	1.361
	CNS0095614	Golden flower (tetraploid) 2	4.596
	CNS0095615	Golden flower (tetraploid) 3	1.272
CRA001975	CRR073297	Stem 1	9.427
	CRR073298	Stem 2	7.353
	CRR073299	Stem 3	4.666
	CRR073300	Leaf 1	9.421
	CRR073301	Leaf 2	8.775
	CRR073302	Leaf 3	4.219
	CRR073303	Juvenile bud 1	4.306
	CRR073304	Juvenile bud 2	2.526
	CRR073305	Juvenile bud 3	4.225
	CRR073306	Third green 1	0.452
	CRR073307	Third green 2	0.539
	CRR073308	Third green 3	0.710
	CRR073309	Second white 1	0.394
	CRR073310	Second white 2	0.329
	CRR073311	Second white 3	0.373
	CRR073312	Silver flowering 1	0.274
	CRR073313	Silver flowering 2	0.071
	CRR073314	Silver flowering 3	0.064
	CRR073315	Gold flowering 1	2.474
	CRR073316	Gold flowering 2	4.830
	CRR073317	Gold flowering 3	1.245
	CRR073318	Tawny withering 1	5.087
	CRR073319	Tawny withering 2	3.201
	CRR073320	Tawny withering 3	6.762