Gene detail

Detail information of GWHGAAZE006613

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002519035.1	conserved hypothetical protein [Ricinus communis]
Swissprot	tr\|F4JGZ1\|MED16_ARATH	Mediator of RNA polymerase II transcription subunit 16
trEMBL	tr\|B9RZ66\|B9RZ66_RICCO	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF43246.1}
TAIR10	AT4G04920.2	sensitive to freezing 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28667419	28684283	+
GWHAAZE00000002	mRNA	28667419	28684283	+
GWHAAZE00000002	exon	28667419	28667681	+
GWHAAZE00000002	exon	28670555	28670623	+
GWHAAZE00000002	exon	28671006	28671094	+
GWHAAZE00000002	exon	28673654	28673766	+
GWHAAZE00000002	exon	28674015	28674116	+
GWHAAZE00000002	exon	28674217	28674301	+
GWHAAZE00000002	exon	28675029	28675625	+
GWHAAZE00000002	exon	28676795	28677407	+
GWHAAZE00000002	exon	28677910	28677989	+
GWHAAZE00000002	exon	28678709	28678791	+
GWHAAZE00000002	exon	28679411	28679647	+
GWHAAZE00000002	exon	28679734	28679905	+
GWHAAZE00000002	exon	28681057	28681571	+
GWHAAZE00000002	exon	28681885	28682061	+
GWHAAZE00000002	exon	28683255	28683629	+
GWHAAZE00000002	exon	28684146	28684283	+
GWHAAZE00000002	CDS	28667419	28667681	+
GWHAAZE00000002	CDS	28670555	28670623	+
GWHAAZE00000002	CDS	28671006	28671094	+
GWHAAZE00000002	CDS	28673654	28673766	+
GWHAAZE00000002	CDS	28674015	28674116	+
GWHAAZE00000002	CDS	28674217	28674301	+
GWHAAZE00000002	CDS	28675029	28675625	+
GWHAAZE00000002	CDS	28676795	28677407	+
GWHAAZE00000002	CDS	28677910	28677989	+
GWHAAZE00000002	CDS	28678709	28678791	+
GWHAAZE00000002	CDS	28679411	28679647	+
GWHAAZE00000002	CDS	28679734	28679905	+
GWHAAZE00000002	CDS	28681057	28681571	+
GWHAAZE00000002	CDS	28681885	28682061	+
GWHAAZE00000002	CDS	28683255	28683629	+
GWHAAZE00000002	CDS	28684146	28684283	+

Transcript Sequence
>GWHTAAZE006621 ATGAGTGCCAGTCCCTCCTCTACTGTTAAGGAATCCGAAGAGGATTCCACCGAAACTTCCACAGCTCTCGAAGTTTCCAAGTCCGGCGAGAAGGGCCAACCGGTCGCTGCGGCCGACGGCCAAGAAGAAGTTCCGCCGATGGCTGCTGATCCCATGGAGGAGGATCCGGTGGATCCTGCAACTGTCTTCTGTATTAGGCTTAAGCAGCCTAGGACTAATTTGCAGCACAAAATGAGTGTTCCTGAACTTTGTCGTAATTTCAGTGCTGTTGCTTGGTGTGGGAAGCTAAATGCCATAGCATGTGCATCTGAGACATGTGCCAGAATTCCAAGTTCTCATGCAAATCCACCATTTTGGATCCCTATACATATTGTGATCCCAGAGCGGCCTACTGAGTGCACAGTGTTCAATGTCATAGCAGATTCCCCTCGTGATTCTGTTCATTTTATTGAATGGTCCCCTGCATCTTGCCCTCGAGCGTTGCTAATAGCTAATTTCCATGGGAGGATAACCATCTGGACACAGCCTTCCCAAGGGCCAGCTAACCTGGTACGAGATGCTAGTTGTTGGCAGCGGGAGCATGAGTGGCGTCAGGATATTGCAGTTGTTACAAAATGGCTATCAGGGGTGTCACCGTATAGGTGGCTTTCTTCAAGATCTAGTAGTTCCACAAAGTCAACGTTTGAGGAAAAGTTCCTTTCGCAGCAACCTCAAGCATCAGCTGGATGGCCAAATTTTCTGTGCGTATGCTCTGTCTTCTCGTCAGGTTCTGTTCAACTCCACTGGTCTCAATGGCCATCGAACCAGGCTGATGTGACATCAAAATGGTTTTGTACAAGCAAAGGTCTCTTGGGAGCCGGGCCTAGTGGAATTATGGCTGCTGATGCTATTGTAACAGATTCTGGAGCCATGCATGTGGCTGGTGTGCCAATTGTGAACCCATCAACTGTAGTTGTTTGGGAGGTGACACCTGGCCCTGGAAATGGATTTCAAGCAACTCCAAAGGCAAGTGTGGGCAATGGGGTCCCACCTTCACTTAACCCTCCTTCTTGGGACGGTTTTGCCCCTTTGGCTGCTTACTTGTTTAGCTGGCAAGAATATTTGTTGTTAGAAGCTAAGCAAGGGAAAAAGCAGATACAGCAGGATTGTTGTGATATGGTAGCACTTCACTGTTCACCTGTTTCAAACTTTTCTGCATATGTGAGTCCTGAGGCTGCAGCTCAATCAGCAGCTACAACTACATGGGGTTCTGGGGTCACTGCAGTTGCGTTTGATCCAACTTGTGGTGGTTCTGTTATAGCTGTTGTAATAGTCGAGGGGCAGTACATGTCCCCTTATGATCCTGATGAGGGTCCTTCAATTACAGGATGGAGAGTACAACGTTGGGAATCATCTCTTGAGCCTGTTGTTCTCCATCAGATATTTGGAAACCCTACATCCAGTTTTGGTGGGCAGGCGCCAATGCAAACAGTTTGGGTGACTAAAGTGAATAAATGCATTCCTTCAACTAATTATTTTAAAAATTACCAAGGACCTGGAGCTGGTTCAACCTTTGATGGGAAAAACACATCTGAGCCTGGGAAGACAAAAAGGGTCAGTTTTGATCCATTTGATCTGCCCAGTGATGTTAGAACTCTTGCTCGAATTGTCTATTCTGCTCACGGCGGTGAGATTGCTGTTGCTTTTCTACAAGGTGGTGTCCATATTTTTTCTGGTGCAAGCTTTAAAACTGTTGATAACTACCAGATAAATGTTGGTTCTGCAATTGCTTCTCCTGCCTTCTCTTCTACAAGCTGCTGTTCAGCTTCTGTTTGGCATGATACAAGCAAGGATCGTACTATACTAAGGATAATTCGTGTGCTTCCTCCTGCTCTTCCCAGTAGTCAAGTGAAATCTAACTCCTCGACATGGGAACGTGCAATTGCAGAGAGATTTTGGTGGAGTCTCTTGGTGGGAGTTGATTGGTGGGATGCTGTTGGTTGTACACAGAGTGCTGCTGAGGATGGCATTGTTTCGCTGAACAGTGTCATTGCAGTGTTGGATTCGGATTTTCATTCTCTTCCTTCCACTCAGCACAGACAACAGTATGGACCTAGCCTAGACAGGATAAAGTGCAGGCTATTAGAAGGTACAAATGCTCAAGAAGTTAGGGCAATGGTTCTTGATATGCAAGCGAGATTGTTGCTGGATATGCTGGGGAAAGGAATAGAAGCAGCTTTGATAAATCCTTCAGCTCTGGTAACTGAACCATGGGTAGCATCCGGTGAGACATTATCTGGCATTGATCCTGAAGCAATGGCTGTTGAACCAGCACTAGTGATTAGCATCCAGGCTTATGTTGATGCAGTCCTTGATCTAGCATCACACTTTATTACACGCTTGCGACGCTATGCAAGTTTCTGTCGAACATTGGCTAGCCATGCTGTTACTGCGGGCGCAGGTGGCAACCGGAGTATGGTGACCAGTCCTACCCAAAATTCTGCATCTCCTGCAGCAGCCCAGGGAACTCAAGGTGGTACTGCAAATTCCACTGGAAGCACTCAGATGCAAGCTTGGGTACAAGGTGCTATTGCCAAGATCAGTGGTACCTCAGATGGAGTTCCCAATGCGTCCCCAAATCCCATAAACGGGCCCTCATCGTTTATGCCAATAAGTATTAATACAGGAACTTTCCCAGGAACTCCAGCTGTTAGGCTAATTGGGGATTGCCATTTCCTTCATAGATTATGCCAACTTTTGCTTTTCTGTTTTTTCTTTCGGCGGACACAACTACCCCGTGGGGGCACTCAAAGAAACACTGATACAAGTGCGCAAAAACTTCAGCCTGGTGGTCCAGGCAAGGTAGAAGAAGTGAACTCTGGTCCTTCAAAACCCACATCAGCTATGGTCAGATCAGATGAAGGACAAGTTTCTCGGGTCGCTCAGGTTAACTCTGGAGCAAAAGGACCTGAAGAAGCTACAGCTAGCAGATCAAGATCAGGTTCTGGCAATGCTGGTCAAGGATACACATTTGAGGAGGTGAAAGTCCTCTTCCTCATACTCATGGATCTTTGTAGGCGAACGGCTGGACTGGCTCATCCCTTACCGATTTCGCAGGTGGGGAGCAGCAATATCCAAGTTCGTCTTCATTATATTGATGGGAACTATACCGTCTTACCAGAGGTTGTAGAGGCATCCCTAGGCCCACATATGCAGAATATGCCCCGACCTAGAGGTGCAGATGCTGCTGGTTTGTTACTACGTGAGTTAGAACTTCATCCTCCTGCTGAAGAATGGCACAGGCGAAACATGTTTGGTGGGCCCTGGTCTGATCCCGAGGATATGGGCCCCGCTGATGATTCCAGACTTGGCTCTTCAACAGACCCACTTGACTTGAGCTTTTCAGAAAGCTGTGGTATTAAACACGGATCAAACGGCTTGTGGCCAAGGAAGCGCAGGCTGTCTGAAAGAGATGCTGCTTTTGGCTTGAATACATCGGTGGGCTTGGGATCATATCTTGGTATAATGGGATCTCGAAGAGATGTTGTAACTGCTGTGTGGAAGACTGGGCTTGATGGTGCTTGGTATAAGTGCATAAGATGCTTGCGGCAGAGTTCAGCTTTTTCTTCACCAGGTTCCAGCTGCCAGAACGACAGAGAGATATGGTGGATTAGCCGCTGGGTCCATGGCTGTCCGATGTGTGGTGGAACATGGGTTCGTGTGGTATAG

Network for GWHGAAZE006613

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAZE006617
MSASPSSTVKESEEDSTETSTALEVSKSGEKGQPVAAADGQEEVPPMAADPMEEDPVDPATVFCIRLKQPRTNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSHANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVHFIEWSPASCPRALLIANFHGRITIWTQPSQGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSRSSSSTKSTFEEKFLSQQPQASAGWPNFLCVCSVFSSGSVQLHWSQWPSNQADVTSKWFCTSKGLLGAGPSGIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKASVGNGVPPSLNPPSWDGFAPLAAYLFSWQEYLLLEAKQGKKQIQQDCCDMVALHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLEPVVLHQIFGNPTSSFGGQAPMQTVWVTKVNKCIPSTNYFKNYQGPGAGSTFDGKNTSEPGKTKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLQGGVHIFSGASFKTVDNYQINVGSAIASPAFSSTSCCSASVWHDTSKDRTILRIIRVLPPALPSSQVKSNSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDSDFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIEAALINPSALVTEPWVASGETLSGIDPEAMAVEPALVISIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGAGGNRSMVTSPTQNSASPAAAQGTQGGTANSTGSTQMQAWVQGAIAKISGTSDGVPNASPNPINGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRGGTQRNTDTSAQKLQPGGPGKVEEVNSGPSKPTSAMVRSDEGQVSRVAQVNSGAKGPEEATASRSRSGSGNAGQGYTFEEVKVLFLILMDLCRRTAGLAHPLPISQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDMGPADDSRLGSSTDPLDLSFSESCGIKHGSNGLWPRKRRLSERDAAFGLNTSVGLGSYLGIMGSRRDVVTAVWKTGLDGAWYKCIRCLRQSSAFSSPGSSCQNDREIWWISRWVHGCPMCGGTWVRVV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.414
	SRR3591706	second leaf	26.401
	SRR3591707	mature leaf	26.587
	SRR3591708	Shoot apex	35.291
	SRR3591709	Stem	56.545
	SRR3591710	White floral bud	116.325
	SRR3591711	White flower	72.178
	SRR3591712	Green floral bud	57.816
	SRR3591713	Yellow flower	45.686
SRP173429	SRR8316895	Juvenile bud stage	19.835
	SRR8316896	Juvenile bud stage	26.525
	SRR8316897	Juvenile bud stage	13.261
	SRR8316894	Third green stage	16.448
	SRR8316900	Third green stage	34.890
	SRR8316901	Third green stage	34.205
	SRR8316898	Complete white stage	25.658
	SRR8316899	Complete white stage	50.333
	SRR8316903	Complete white stage	45.336
	SRR8316902	Silver flowering stage	20.606
	SRR8316904	Silver flowering stage	27.604
	SRR8316905	Silver flowering stage	13.870
	SRR8316906	Gold flowering stage	40.852
	SRR8316907	Gold flowering stage	30.708
	SRR8316908	Gold flowering stage	37.513
SRP132670	SRR6706286	Control	37.652
	SRR6706287	Light intensity 50%	43.416
	SRR6706288	Light intensity 20%	44.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.275
	CNS0095593	Slightly white alabastrum(diploid) 2	19.055
	CNS0095594	Slightly white alabastrum(diploid) 3	13.281
	CNS0095595	Whole white alabastrum(diploid) 2	15.945
	CNS0095596	Whole white alabastrum(diploid) 3	12.765
	CNS0095597	Whole white alabastrum(diploid) 4	13.730
	CNS0095598	Silvery flower (diploied) 1	20.563
	CNS0095599	Silvery flower (diploied) 2	17.782
	CNS0095600	Silvery flower (diploied) 3	40.259
	CNS0095601	Golden flower (diploid) 1	18.959
	CNS0095602	Golden flower (diploid) 2	32.003
	CNS0095603	Golden flower (diploid) 3	31.357
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.811
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.888
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.515
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.778
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.506
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.803
	CNS0095610	Silvery flower (tetraploid) 1	36.131
	CNS0095611	Silvery flower (tetraploid) 2	37.916
	CNS0095612	Silvery flower (tetraploid) 3	38.761
	CNS0095613	Golden flower (tetraploid) 1	16.591
	CNS0095614	Golden flower (tetraploid) 2	29.962
	CNS0095615	Golden flower (tetraploid) 3	27.860
CRA001975	CRR073297	Stem 1	40.379
	CRR073298	Stem 2	36.308
	CRR073299	Stem 3	27.701
	CRR073300	Leaf 1	52.107
	CRR073301	Leaf 2	49.402
	CRR073302	Leaf 3	38.977
	CRR073303	Juvenile bud 1	34.836
	CRR073304	Juvenile bud 2	36.797
	CRR073305	Juvenile bud 3	42.784
	CRR073306	Third green 1	28.798
	CRR073307	Third green 2	24.018
	CRR073308	Third green 3	27.557
	CRR073309	Second white 1	21.977
	CRR073310	Second white 2	19.149
	CRR073311	Second white 3	18.803
	CRR073312	Silver flowering 1	21.048
	CRR073313	Silver flowering 2	23.989
	CRR073314	Silver flowering 3	20.434
	CRR073315	Gold flowering 1	12.790
	CRR073316	Gold flowering 2	23.118
	CRR073317	Gold flowering 3	18.577
	CRR073318	Tawny withering 1	29.467
	CRR073319	Tawny withering 2	20.279
	CRR073320	Tawny withering 3	24.145