Detail information of GWHGAAZE006617


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010241966.15.00112E-81PREDICTED: tetraspanin-19 isoform X2 [Nelumbo nucifera]
Swissprottr|Q940P5|TET19_ARATH1E-70Tetraspanin-19
trEMBLtr|A0A061GFU4|A0A061GFU4_THECC6E-81Tetraspanin family protein, putative isoform 1 {ECO:0000313|EMBL:EOY28283.1}
TAIR10AT2G20740.13E-57Tetraspanin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2871304328714800-
GWHAAZE00000002mRNA2871304328714800-
GWHAAZE00000002exon2871304328713216-
GWHAAZE00000002exon2871351628713620-
GWHAAZE00000002exon2871372728713807-
GWHAAZE00000002exon2871424928714348-
GWHAAZE00000002exon2871463428714800-
GWHAAZE00000002CDS2871463428714800-
GWHAAZE00000002CDS2871424928714348-
GWHAAZE00000002CDS2871372728713807-
GWHAAZE00000002CDS2871351628713620-
GWHAAZE00000002CDS2871304328713216-
Transcript Sequence

Network for GWHGAAZE006617

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0159


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00335.21Tetraspanin121143.10E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE006617.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.828
SRR3591706second leaf10.530
SRR3591707mature leaf9.349
SRR3591708Shoot apex14.397
SRR3591709Stem27.041
SRR3591710White floral bud35.920
SRR3591711White flower19.131
SRR3591712Green floral bud14.416
SRR3591713Yellow flower0.720
SRP173429 SRR8316895Juvenile bud stage 16.447
SRR8316896Juvenile bud stage 14.062
SRR8316897Juvenile bud stage 7.648
SRR8316894Third green stage 7.244
SRR8316900Third green stage 12.334
SRR8316901Third green stage 10.960
SRR8316898Complete white stage 3.771
SRR8316899Complete white stage 30.720
SRR8316903Complete white stage 12.687
SRR8316902Silver flowering stage3.099
SRR8316904Silver flowering stage3.656
SRR8316905Silver flowering stage1.069
SRR8316906Gold flowering stage 3.769
SRR8316907Gold flowering stage 3.591
SRR8316908Gold flowering stage 4.260
SRP132670SRR6706286Control15.032
SRR6706287Light intensity 50%16.126
SRR6706288Light intensity 20%18.063
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.554
CNS0095593Slightly white alabastrum(diploid) 221.593
CNS0095594Slightly white alabastrum(diploid) 319.152
CNS0095595Whole white alabastrum(diploid) 223.077
CNS0095596Whole white alabastrum(diploid) 310.808
CNS0095597Whole white alabastrum(diploid) 416.310
CNS0095598Silvery flower (diploied) 188.913
CNS0095599Silvery flower (diploied) 249.471
CNS0095600Silvery flower (diploied) 318.779
CNS0095601Golden flower (diploid) 152.106
CNS0095602Golden flower (diploid) 234.927
CNS0095603Golden flower (diploid) 332.510
CNS0095604Slightly white alabastrum(tetraploid) 124.811
CNS0095605Slightly white alabastrum(tetraploid) 215.946
CNS0095606Slightly white alabastrum(tetraploid) 347.063
CNS0095607Whole white alabastrum(tetraploid) 132.987
CNS0095608Whole white alabastrum(tetraploid) 26.697
CNS0095609Whole white alabastrum(tetraploid) 38.417
CNS0095610Silvery flower (tetraploid) 16.745
CNS0095611Silvery flower (tetraploid) 217.060
CNS0095612Silvery flower (tetraploid) 310.314
CNS0095613Golden flower (tetraploid) 13.835
CNS0095614Golden flower (tetraploid) 23.317
CNS0095615Golden flower (tetraploid) 31.656
CRA001975CRR073297Stem 117.427
CRR073298Stem 215.543
CRR073299Stem 314.252
CRR073300Leaf 111.399
CRR073301Leaf 28.574
CRR073302Leaf 36.372
CRR073303Juvenile bud 16.267
CRR073304Juvenile bud 24.085
CRR073305Juvenile bud 310.034
CRR073306Third green 11.199
CRR073307Third green 20.873
CRR073308Third green 31.566
CRR073309Second white 14.315
CRR073310Second white 22.416
CRR073311Second white 30.589
CRR073312Silver flowering 10.651
CRR073313Silver flowering 21.407
CRR073314Silver flowering 30.145
CRR073315Gold flowering 18.932
CRR073316Gold flowering 29.654
CRR073317Gold flowering 38.230
CRR073318Tawny withering 13.839
CRR073319Tawny withering 25.592
CRR073320Tawny withering 33.316