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Detail information of GWHGAAZE006617
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010241966.1
5.00112E-81
PREDICTED: tetraspanin-19 isoform X2 [Nelumbo nucifera]
Swissprot
tr|Q940P5|TET19_ARATH
1E-70
Tetraspanin-19
trEMBL
tr|A0A061GFU4|A0A061GFU4_THECC
6E-81
Tetraspanin family protein, putative isoform 1 {ECO:0000313|EMBL:EOY28283.1}
TAIR10
AT2G20740.1
3E-57
Tetraspanin family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
28713043
28714800
-
GWHAAZE00000002
mRNA
28713043
28714800
-
GWHAAZE00000002
exon
28713043
28713216
-
GWHAAZE00000002
exon
28713516
28713620
-
GWHAAZE00000002
exon
28713727
28713807
-
GWHAAZE00000002
exon
28714249
28714348
-
GWHAAZE00000002
exon
28714634
28714800
-
GWHAAZE00000002
CDS
28714634
28714800
-
GWHAAZE00000002
CDS
28714249
28714348
-
GWHAAZE00000002
CDS
28713727
28713807
-
GWHAAZE00000002
CDS
28713516
28713620
-
GWHAAZE00000002
CDS
28713043
28713216
-
Transcript Sequence
>GWHTAAZE006625 ATGGTGCGAGTGGTGAAGAGATGCCTTCAGCTGTTTATGAAGCTTGTGAATTCAATATGTGGGATAACAGGGATTGCTATGATTTTGTATAGTTTGTGGATGATTAGGGTTTGGCAGATAGATGCACAAGCGTCCTCATTTGATCAGCAAACTTCGACTATGCCATGGTTTATATATGCATTTCTTGGCATTGGTATCACTTTCTGTGCCATTACTTGCCTTGGCCATGTTGCTGCTGATTCTGCAAATGCTTATTGTCTCTCCTGTTATATGGTTATTGTCCTTTCAATTCTCCTGTTAGAGACTTTGGTTATTGCGGATATATTCCTAAATTCTGATTGGGAGAAGGACTTCCCTCCTGATCCCTCTGGAAGGTTCGATGATTTTAAGGATTTTGTGAAGTCAAACCTCGACATCTGCCAATGGGTCGGCTTCTCGATTATCCTTGCACAGGGACTTTCGATATTATCAGCCACCGTTTTAAGAACTCTCAATGCATATAAGCGAACTAAGTATGACAGTGACTATGATTATGATCCAAGGCATCCTCTTTTAAACCCTCATGGTCATCCATTTCCATATGTTGTTGGCGAACCGCACTTCGCCCCCAAGAACGAGGCTTGGAAG
Network for GWHGAAZE006617
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
CFinderModule0159
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00335.21
Tetraspanin
12
114
3.10E-08
Protein Sequence
>GWHPAAZE006621 MVRVVKRCLQLFMKLVNSICGITGIAMILYSLWMIRVWQIDAQASSFDQQTSTMPWFIYAFLGIGITFCAITCLGHVAADSANAYCLSCYMVIVLSILLLETLVIADIFLNSDWEKDFPPDPSGRFDDFKDFVKSNLDICQWVGFSIILAQGLSILSATVLRTLNAYKRTKYDSDYDYDPRHPLLNPHGHPFPYVVGEPHFAPKNEAWK
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0016021
cellular_component
integral component of membrane
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
6.828
SRR3591706
second leaf
10.530
SRR3591707
mature leaf
9.349
SRR3591708
Shoot apex
14.397
SRR3591709
Stem
27.041
SRR3591710
White floral bud
35.920
SRR3591711
White flower
19.131
SRR3591712
Green floral bud
14.416
SRR3591713
Yellow flower
0.720
SRP173429
SRR8316895
Juvenile bud stage
16.447
SRR8316896
Juvenile bud stage
14.062
SRR8316897
Juvenile bud stage
7.648
SRR8316894
Third green stage
7.244
SRR8316900
Third green stage
12.334
SRR8316901
Third green stage
10.960
SRR8316898
Complete white stage
3.771
SRR8316899
Complete white stage
30.720
SRR8316903
Complete white stage
12.687
SRR8316902
Silver flowering stage
3.099
SRR8316904
Silver flowering stage
3.656
SRR8316905
Silver flowering stage
1.069
SRR8316906
Gold flowering stage
3.769
SRR8316907
Gold flowering stage
3.591
SRR8316908
Gold flowering stage
4.260
SRP132670
SRR6706286
Control
15.032
SRR6706287
Light intensity 50%
16.126
SRR6706288
Light intensity 20%
18.063
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
20.554
CNS0095593
Slightly white alabastrum(diploid) 2
21.593
CNS0095594
Slightly white alabastrum(diploid) 3
19.152
CNS0095595
Whole white alabastrum(diploid) 2
23.077
CNS0095596
Whole white alabastrum(diploid) 3
10.808
CNS0095597
Whole white alabastrum(diploid) 4
16.310
CNS0095598
Silvery flower (diploied) 1
88.913
CNS0095599
Silvery flower (diploied) 2
49.471
CNS0095600
Silvery flower (diploied) 3
18.779
CNS0095601
Golden flower (diploid) 1
52.106
CNS0095602
Golden flower (diploid) 2
34.927
CNS0095603
Golden flower (diploid) 3
32.510
CNS0095604
Slightly white alabastrum(tetraploid) 1
24.811
CNS0095605
Slightly white alabastrum(tetraploid) 2
15.946
CNS0095606
Slightly white alabastrum(tetraploid) 3
47.063
CNS0095607
Whole white alabastrum(tetraploid) 1
32.987
CNS0095608
Whole white alabastrum(tetraploid) 2
6.697
CNS0095609
Whole white alabastrum(tetraploid) 3
8.417
CNS0095610
Silvery flower (tetraploid) 1
6.745
CNS0095611
Silvery flower (tetraploid) 2
17.060
CNS0095612
Silvery flower (tetraploid) 3
10.314
CNS0095613
Golden flower (tetraploid) 1
3.835
CNS0095614
Golden flower (tetraploid) 2
3.317
CNS0095615
Golden flower (tetraploid) 3
1.656
CRA001975
CRR073297
Stem 1
17.427
CRR073298
Stem 2
15.543
CRR073299
Stem 3
14.252
CRR073300
Leaf 1
11.399
CRR073301
Leaf 2
8.574
CRR073302
Leaf 3
6.372
CRR073303
Juvenile bud 1
6.267
CRR073304
Juvenile bud 2
4.085
CRR073305
Juvenile bud 3
10.034
CRR073306
Third green 1
1.199
CRR073307
Third green 2
0.873
CRR073308
Third green 3
1.566
CRR073309
Second white 1
4.315
CRR073310
Second white 2
2.416
CRR073311
Second white 3
0.589
CRR073312
Silver flowering 1
0.651
CRR073313
Silver flowering 2
1.407
CRR073314
Silver flowering 3
0.145
CRR073315
Gold flowering 1
8.932
CRR073316
Gold flowering 2
9.654
CRR073317
Gold flowering 3
8.230
CRR073318
Tawny withering 1
3.839
CRR073319
Tawny withering 2
5.592
CRR073320
Tawny withering 3
3.316