Gene detail

Detail information of GWHGAAZE006619

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009352931.1	0	PREDICTED: uncharacterized protein LOC103944224 [Pyrus x bretschneideri]
Swissprot	tr\|O65607\|MSH3_ARATH	5E-16	DNA mismatch repair protein MSH3
trEMBL	tr\|A0A022QL56\|A0A022QL56_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU27963.1}
TAIR10	AT1G65070.2	0	DNA mismatch repair protein MutS, type 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28734952	28745647	+
GWHAAZE00000002	mRNA	28734952	28745647	+
GWHAAZE00000002	exon	28734952	28735436	+
GWHAAZE00000002	exon	28742169	28742520	+
GWHAAZE00000002	exon	28742692	28743078	+
GWHAAZE00000002	exon	28743166	28743690	+
GWHAAZE00000002	exon	28744235	28744696	+
GWHAAZE00000002	exon	28745339	28745647	+
GWHAAZE00000002	CDS	28734952	28735436	+
GWHAAZE00000002	CDS	28742169	28742520	+
GWHAAZE00000002	CDS	28742692	28743078	+
GWHAAZE00000002	CDS	28743166	28743690	+
GWHAAZE00000002	CDS	28744235	28744696	+
GWHAAZE00000002	CDS	28745339	28745647	+

Transcript Sequence
>GWHTAAZE006627 ATGAAACTTCACACTACTTTTATCACCGTCACTCCTCTTCCAACTCCAAATCCCCACCGTCTCTGCTCTCTCCCCTCCACCATCCATCTCTCCTCCACCACCCCTAACCACCGTATCAAACTCGCCGAATCCCTCCAAAACGAGACGCTTAAAACCCTAGAATGGCCCTCCGTATGCAACCAACTCTCCGCCTTCACCTCCACCACCATGGGCGTCGCCGCCTCCAAAACCGCCCGGGTTCCCGTGGGCCGGAGTCCGGACGAGAGCCGGAAGCTCCTGGCCCAGACCGCCGCTGCAGTGGCTCTTCCTCGGCCGTTGGATTTCTCCGGGATCGAAGATGTGTCTGAGATCGTTGATTCTGCGGTTGCTGGTGATTTGCTTTCGATTAGTGAGCTTTGTGCGGTGGAGAGGACTTTGGCAGCTGCAAGAGGGTTGTTTGAACAGTTGGAGGAAATGTCGGTATTAGACCATAGTTCTTCGGAAAGGTACTGCCCCCTGCTTGAAATTCTTCAAGATTGCAACTTTCTGAAGGATTTGGAGCAAAAAATAGGATTCTGTATAGATTGTAAATTGTCAATGATACTTGATAGAGCCAGTGACGATTTGGAGTTACTTAGGTCAGAGAGAAAGAGGAACATGGAAAATCTAGAATCTTTGTTGAAGCAGCTTTCGGCTAGGATTTTTCAGGCTGGGGGCATTGACAGACCATTGGTAACCAAGCGCCGTTCAAGAATGTGTGTTGGCGTTAGAGCTTCTCATAAGTCTCTGGTTCCGGGTTGTATAACTCTTAATGTTAGCAGCTCTGGTGCAACGTACTTTGTGGAGCCCAAAGAGGCATGGATGAAAGGGGTCTGTCCCTTTTTAGTTTCGGAGTATTCTGAGGATATTAAATTGAGTTCAATAGATATTGAAGGTATACAACATCCTTTGCTTCTTGAGACTTCTCTGAGAAGTTCCCCTAATTCTTCGAATGAGGGAAATGGCACGATGAATTCTGAAATGTTATCTGGGCCGTCTGATTTTCCCGTGCCAATTGACATCAAAATTGGATGTCACACAAGGGTGGTGGTGATTTCTGGACCTAACACTGGAGGTAAAACTGCATCCATGAAAACCTTAGGCCTAGCATCTGTTATGCTGAAGGCTGGCATGTATTTGCCTGCTCGAAACCACCCAAGGCTTCCATGGTTTGATCTTATTCTGGCAGATATTGGAGATCACCAGTCTCTAGAACAAAATCTCTCAACTTTTAGCGGTCACATCTCGCGAATCTGTAAGATTTTAGAAGTGGCATCTGCAGAATCACTTATCCTTATTGATGAAATTGGGAGTGGGACCGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGCATATTGCAGTATCTAAAGGATAGAGTTAACTTGGCTGTGGTAACTACCCATTTCGCGGATCTATCTCGCTTGAAAGAAAAGGATAGTCGGTTTGAGAATGCAGCAATGGAGTTTTCCATGGAGACTCTACAACCTACCTATCGGGTACTTTGGGGAAGCACTGGCGAATCAAATGCCCTAAGTATTGCTAAATCAATCGGTTTTGATGACAAGATAATTGAATGTGCAAAGACATGGGTAGAAAGGTTGATACCAGAAAAGTTGCAGAAGCAGAAAGGTCTGCTTTATCAGTCGTTAGTGGAGGAAAGAAGCAAATTAGAAACTCAGGCAAACAGAGCTGCATCGCTTCATTCAGATGTTTTGAAAATATATAATGAGATCCGAGATGAGGCAGAAGATCTTGGTGGGCGTGTGGTGGCTCTTAAGGCCAAAGACACCAAACAGGTCCAAAGGGAAATAAAAGCCGTAAAGTCTCAGATCGAAACTGTAGTACAGGAGTTTGAGAAGAAGCTTAGAACCACAGGTGCTGATCAGTTTAATTTGTTACTCAAGAAATCAGAGTCTGCAATTGCATCCATTGTTGAAGCTCACCGTCCTACCGACATTCTCTCTGTCAGAGAAACAAATGGCATTCCTTATACACCAAAGCTAGGAGAGAAAATCCATGTAACGGGATTGGGAAATAAGTTGGCTACTGTAGTTGAAGCACCCGGGGATGATGACACGGTCCTTGTTCAATATGGGAAAATCAGGGTCCGCGTTAATATAAGCAGTACAAGAGCTCTTCCAGTTAGTGATTCAAATGCTGCAAGACATTCTGTTCCATCCATGAAAAAGCAGGTCCAGAGGAGAAGAAGTTTAAAGAATCTTCTCGATGCTGACAAGGAGGAGGTTCCCAATGAACCTGTGGTGCAGACATTAAGGAACACAATTGACTTACGCGGTATGGGAGTGGAAGAAGCATCTCACCGGCTCAAGATGGCCATCGGTTCAAGCGGGTCTAACTCTGTTCTCTTTATTATACATGGGATGGGCACTGGGGTTGTCAAGGAGTCCACACGTGAAATATTGAGAAAACACCCACGTATTGCAAAGTTTGAACAGGAAAGTCCTATGAATTATGGTTGTACAGTTGCTTATATCAAGTGA

Network for GWHGAAZE006619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00488.22	MutS_V	357	540	2.70E-33
PF07061.12	Swi5	544	610	0.00016
PF01713.22	Smr	768	838	1.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07456	mutS2	Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006298	biological_process	mismatch repair
GO:0045910	biological_process	negative regulation of DNA recombination
GO:0005524	molecular_function	ATP binding
GO:0030983	molecular_function	mismatched DNA binding
GO:0004519	molecular_function	endonuclease activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.979
	SRR3591706	second leaf	5.442
	SRR3591707	mature leaf	9.371
	SRR3591708	Shoot apex	6.862
	SRR3591709	Stem	2.707
	SRR3591710	White floral bud	2.078
	SRR3591711	White flower	4.048
	SRR3591712	Green floral bud	1.247
	SRR3591713	Yellow flower	4.770
SRP173429	SRR8316895	Juvenile bud stage	3.004
	SRR8316896	Juvenile bud stage	3.352
	SRR8316897	Juvenile bud stage	2.137
	SRR8316894	Third green stage	1.555
	SRR8316900	Third green stage	4.287
	SRR8316901	Third green stage	3.845
	SRR8316898	Complete white stage	2.328
	SRR8316899	Complete white stage	4.846
	SRR8316903	Complete white stage	4.487
	SRR8316902	Silver flowering stage	2.367
	SRR8316904	Silver flowering stage	3.204
	SRR8316905	Silver flowering stage	2.166
	SRR8316906	Gold flowering stage	7.133
	SRR8316907	Gold flowering stage	7.173
	SRR8316908	Gold flowering stage	6.003
SRP132670	SRR6706286	Control	2.859
	SRR6706287	Light intensity 50%	2.804
	SRR6706288	Light intensity 20%	2.891
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.073
	CNS0095593	Slightly white alabastrum(diploid) 2	1.822
	CNS0095594	Slightly white alabastrum(diploid) 3	2.229
	CNS0095595	Whole white alabastrum(diploid) 2	2.323
	CNS0095596	Whole white alabastrum(diploid) 3	1.856
	CNS0095597	Whole white alabastrum(diploid) 4	3.220
	CNS0095598	Silvery flower (diploied) 1	7.557
	CNS0095599	Silvery flower (diploied) 2	5.939
	CNS0095600	Silvery flower (diploied) 3	7.201
	CNS0095601	Golden flower (diploid) 1	6.159
	CNS0095602	Golden flower (diploid) 2	9.379
	CNS0095603	Golden flower (diploid) 3	8.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.253
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.705
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.271
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.253
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.756
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.075
	CNS0095610	Silvery flower (tetraploid) 1	6.426
	CNS0095611	Silvery flower (tetraploid) 2	7.899
	CNS0095612	Silvery flower (tetraploid) 3	6.661
	CNS0095613	Golden flower (tetraploid) 1	4.539
	CNS0095614	Golden flower (tetraploid) 2	5.327
	CNS0095615	Golden flower (tetraploid) 3	5.309
CRA001975	CRR073297	Stem 1	6.272
	CRR073298	Stem 2	5.818
	CRR073299	Stem 3	4.606
	CRR073300	Leaf 1	4.692
	CRR073301	Leaf 2	4.193
	CRR073302	Leaf 3	2.459
	CRR073303	Juvenile bud 1	2.890
	CRR073304	Juvenile bud 2	4.041
	CRR073305	Juvenile bud 3	4.159
	CRR073306	Third green 1	1.669
	CRR073307	Third green 2	1.323
	CRR073308	Third green 3	1.888
	CRR073309	Second white 1	1.781
	CRR073310	Second white 2	1.836
	CRR073311	Second white 3	2.661
	CRR073312	Silver flowering 1	1.911
	CRR073313	Silver flowering 2	2.056
	CRR073314	Silver flowering 3	2.465
	CRR073315	Gold flowering 1	19.116
	CRR073316	Gold flowering 2	29.079
	CRR073317	Gold flowering 3	18.654
	CRR073318	Tawny withering 1	2.996
	CRR073319	Tawny withering 2	2.473
	CRR073320	Tawny withering 3	2.914