Detail information of GWHGAAZE006621


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009605280.10PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q42877|RPB2_SOLLC0DNA-directed RNA polymerase II subunit RPB2
trEMBLtr|Q1L5B5|Q1L5B5_RHOMC0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}
TAIR10AT4G21710.10DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2878474828793082-
GWHAAZE00000002mRNA2878474828793082-
GWHAAZE00000002exon2878474828784867-
GWHAAZE00000002exon2878516828785590-
GWHAAZE00000002exon2878602828786327-
GWHAAZE00000002exon2878664328786786-
GWHAAZE00000002exon2878687628786929-
GWHAAZE00000002exon2878700128787070-
GWHAAZE00000002exon2878738428787499-
GWHAAZE00000002exon2878758228787677-
GWHAAZE00000002exon2878777028787847-
GWHAAZE00000002exon2878793728788062-
GWHAAZE00000002exon2878816528788269-
GWHAAZE00000002exon2878837328788528-
GWHAAZE00000002exon2878885528788971-
GWHAAZE00000002exon2878905428789161-
GWHAAZE00000002exon2878926728789343-
GWHAAZE00000002exon2878959728789669-
GWHAAZE00000002exon2878983128789968-
GWHAAZE00000002exon2879006728790111-
GWHAAZE00000002exon2879020728790327-
GWHAAZE00000002exon2879041328790499-
GWHAAZE00000002exon2879058828790652-
GWHAAZE00000002exon2879097428791171-
GWHAAZE00000002exon2879130828791598-
GWHAAZE00000002exon2879187828792099-
GWHAAZE00000002exon2879284028793082-
GWHAAZE00000002CDS2879284028793082-
GWHAAZE00000002CDS2879187828792099-
GWHAAZE00000002CDS2879130828791598-
GWHAAZE00000002CDS2879097428791171-
GWHAAZE00000002CDS2879058828790652-
GWHAAZE00000002CDS2879041328790499-
GWHAAZE00000002CDS2879020728790327-
GWHAAZE00000002CDS2879006728790111-
GWHAAZE00000002CDS2878983128789968-
GWHAAZE00000002CDS2878959728789669-
GWHAAZE00000002CDS2878926728789343-
GWHAAZE00000002CDS2878905428789161-
GWHAAZE00000002CDS2878885528788971-
GWHAAZE00000002CDS2878837328788528-
GWHAAZE00000002CDS2878816528788269-
GWHAAZE00000002CDS2878793728788062-
GWHAAZE00000002CDS2878777028787847-
GWHAAZE00000002CDS2878758228787677-
GWHAAZE00000002CDS2878738428787499-
GWHAAZE00000002CDS2878700128787070-
GWHAAZE00000002CDS2878687628786929-
GWHAAZE00000002CDS2878664328786786-
GWHAAZE00000002CDS2878602828786327-
GWHAAZE00000002CDS2878516828785590-
GWHAAZE00000002CDS2878474828784867-
Transcript Sequence

Network for GWHGAAZE006621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04563.16RNA_pol_Rpb2_1364451.10E-73
PF04561.15RNA_pol_Rpb2_22063974.40E-57
PF04565.17RNA_pol_Rpb2_34705341.60E-25
PF04566.14RNA_pol_Rpb2_45696308.40E-22
PF04567.18RNA_pol_Rpb2_56557062.90E-16
PF00562.29RNA_pol_Rpb2_671310838.10E-125
PF04560.21RNA_pol_Rpb2_7108511763.10E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03010RPB2, POLR2B RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
GO:0032549molecular_functionribonucleoside binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.286
SRR3591706second leaf30.358
SRR3591707mature leaf29.453
SRR3591708Shoot apex47.945
SRR3591709Stem46.494
SRR3591710White floral bud49.336
SRR3591711White flower61.616
SRR3591712Green floral bud43.884
SRR3591713Yellow flower53.579
SRP173429 SRR8316895Juvenile bud stage 28.746
SRR8316896Juvenile bud stage 41.325
SRR8316897Juvenile bud stage 18.105
SRR8316894Third green stage 19.301
SRR8316900Third green stage 48.185
SRR8316901Third green stage 43.999
SRR8316898Complete white stage 16.881
SRR8316899Complete white stage 54.832
SRR8316903Complete white stage 40.707
SRR8316902Silver flowering stage25.250
SRR8316904Silver flowering stage40.495
SRR8316905Silver flowering stage18.806
SRR8316906Gold flowering stage 64.309
SRR8316907Gold flowering stage 60.680
SRR8316908Gold flowering stage 65.811
SRP132670SRR6706286Control51.185
SRR6706287Light intensity 50%55.720
SRR6706288Light intensity 20%56.678
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.098
CNS0095593Slightly white alabastrum(diploid) 222.728
CNS0095594Slightly white alabastrum(diploid) 321.323
CNS0095595Whole white alabastrum(diploid) 221.699
CNS0095596Whole white alabastrum(diploid) 317.856
CNS0095597Whole white alabastrum(diploid) 418.968
CNS0095598Silvery flower (diploied) 135.894
CNS0095599Silvery flower (diploied) 230.207
CNS0095600Silvery flower (diploied) 361.975
CNS0095601Golden flower (diploid) 132.351
CNS0095602Golden flower (diploid) 256.440
CNS0095603Golden flower (diploid) 356.382
CNS0095604Slightly white alabastrum(tetraploid) 123.564
CNS0095605Slightly white alabastrum(tetraploid) 220.405
CNS0095606Slightly white alabastrum(tetraploid) 353.224
CNS0095607Whole white alabastrum(tetraploid) 118.791
CNS0095608Whole white alabastrum(tetraploid) 213.690
CNS0095609Whole white alabastrum(tetraploid) 336.696
CNS0095610Silvery flower (tetraploid) 159.065
CNS0095611Silvery flower (tetraploid) 259.684
CNS0095612Silvery flower (tetraploid) 355.141
CNS0095613Golden flower (tetraploid) 128.867
CNS0095614Golden flower (tetraploid) 252.749
CNS0095615Golden flower (tetraploid) 348.703
CRA001975CRR073297Stem 150.438
CRR073298Stem 244.839
CRR073299Stem 337.153
CRR073300Leaf 151.423
CRR073301Leaf 246.866
CRR073302Leaf 335.570
CRR073303Juvenile bud 144.343
CRR073304Juvenile bud 231.165
CRR073305Juvenile bud 363.656
CRR073306Third green 124.125
CRR073307Third green 216.333
CRR073308Third green 326.229
CRR073309Second white 124.979
CRR073310Second white 231.392
CRR073311Second white 336.191
CRR073312Silver flowering 133.613
CRR073313Silver flowering 232.582
CRR073314Silver flowering 331.158
CRR073315Gold flowering 116.444
CRR073316Gold flowering 228.820
CRR073317Gold flowering 316.097
CRR073318Tawny withering 132.742
CRR073319Tawny withering 230.363
CRR073320Tawny withering 329.613