Detail information of GWHGAAZE006622


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267490.20PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Vitis vinifera]
Swissprottr|Q8VY10|UBC24_ARATH0Probable ubiquitin-conjugating enzyme E2 24
trEMBLtr|D7T0D7|D7T0D7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI23966.3}
TAIR10AT2G33770.10phosphate 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2879927028803827-
GWHAAZE00000002mRNA2879927028803827-
GWHAAZE00000002exon2880250828803827-
GWHAAZE00000002exon2880204128802154-
GWHAAZE00000002exon2880151928801932-
GWHAAZE00000002exon2880120528801268-
GWHAAZE00000002exon2880085528800994-
GWHAAZE00000002exon2879996328800274-
GWHAAZE00000002exon2879927028799515-
GWHAAZE00000002CDS2880250828803827-
GWHAAZE00000002CDS2880204128802154-
GWHAAZE00000002CDS2880151928801932-
GWHAAZE00000002CDS2880120528801268-
GWHAAZE00000002CDS2880085528800994-
GWHAAZE00000002CDS2879996328800274-
GWHAAZE00000002CDS2879927028799515-
Transcript Sequence

Network for GWHGAAZE006622

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con6257711.40E-24
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10581UBE2O Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.377
SRR3591706second leaf7.344
SRR3591707mature leaf17.697
SRR3591708Shoot apex7.872
SRR3591709Stem24.146
SRR3591710White floral bud31.112
SRR3591711White flower27.406
SRR3591712Green floral bud14.778
SRR3591713Yellow flower18.529
SRP173429 SRR8316895Juvenile bud stage 6.380
SRR8316896Juvenile bud stage 8.329
SRR8316897Juvenile bud stage 2.477
SRR8316894Third green stage 4.541
SRR8316900Third green stage 8.576
SRR8316901Third green stage 11.477
SRR8316898Complete white stage 5.432
SRR8316899Complete white stage 25.808
SRR8316903Complete white stage 13.232
SRR8316902Silver flowering stage21.014
SRR8316904Silver flowering stage25.166
SRR8316905Silver flowering stage12.527
SRR8316906Gold flowering stage 31.619
SRR8316907Gold flowering stage 37.901
SRR8316908Gold flowering stage 31.661
SRP132670SRR6706286Control14.577
SRR6706287Light intensity 50%12.120
SRR6706288Light intensity 20%12.641
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.589
CNS0095593Slightly white alabastrum(diploid) 211.574
CNS0095594Slightly white alabastrum(diploid) 39.630
CNS0095595Whole white alabastrum(diploid) 28.780
CNS0095596Whole white alabastrum(diploid) 36.342
CNS0095597Whole white alabastrum(diploid) 49.932
CNS0095598Silvery flower (diploied) 118.128
CNS0095599Silvery flower (diploied) 215.184
CNS0095600Silvery flower (diploied) 339.194
CNS0095601Golden flower (diploid) 119.428
CNS0095602Golden flower (diploid) 239.713
CNS0095603Golden flower (diploid) 335.044
CNS0095604Slightly white alabastrum(tetraploid) 15.066
CNS0095605Slightly white alabastrum(tetraploid) 23.930
CNS0095606Slightly white alabastrum(tetraploid) 312.693
CNS0095607Whole white alabastrum(tetraploid) 12.347
CNS0095608Whole white alabastrum(tetraploid) 21.873
CNS0095609Whole white alabastrum(tetraploid) 35.466
CNS0095610Silvery flower (tetraploid) 110.104
CNS0095611Silvery flower (tetraploid) 28.905
CNS0095612Silvery flower (tetraploid) 315.222
CNS0095613Golden flower (tetraploid) 16.783
CNS0095614Golden flower (tetraploid) 27.844
CNS0095615Golden flower (tetraploid) 318.313
CRA001975CRR073297Stem 114.708
CRR073298Stem 213.862
CRR073299Stem 312.223
CRR073300Leaf 119.276
CRR073301Leaf 217.562
CRR073302Leaf 311.664
CRR073303Juvenile bud 117.870
CRR073304Juvenile bud 212.155
CRR073305Juvenile bud 330.092
CRR073306Third green 113.128
CRR073307Third green 29.100
CRR073308Third green 311.729
CRR073309Second white 114.837
CRR073310Second white 220.027
CRR073311Second white 326.132
CRR073312Silver flowering 116.495
CRR073313Silver flowering 217.123
CRR073314Silver flowering 320.524
CRR073315Gold flowering 112.316
CRR073316Gold flowering 212.433
CRR073317Gold flowering 310.517
CRR073318Tawny withering 121.117
CRR073319Tawny withering 223.420
CRR073320Tawny withering 319.888