Gene detail

Detail information of GWHGAAZE006630

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007025588.1	6.5657E-179	LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	1E-115	Transcriptional corepressor LEUNIG
trEMBL	tr\|A0A061GED6\|A0A061GED6_THECC	2E-179	LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1 {ECO:0000313\|EMBL:EOY28210.1}
TAIR10	AT4G32551.1	4E-99	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28992080	29010251	+
GWHAAZE00000002	mRNA	28992080	29010251	+
GWHAAZE00000002	exon	28992080	28992298	+
GWHAAZE00000002	exon	28992408	28992508	+
GWHAAZE00000002	exon	28993473	28993585	+
GWHAAZE00000002	exon	28993822	28993881	+
GWHAAZE00000002	exon	28994143	28994202	+
GWHAAZE00000002	exon	28994454	28994701	+
GWHAAZE00000002	exon	28998589	28998637	+
GWHAAZE00000002	exon	28998721	28998826	+
GWHAAZE00000002	exon	29003813	29003862	+
GWHAAZE00000002	exon	29004081	29004227	+
GWHAAZE00000002	exon	29005212	29005274	+
GWHAAZE00000002	exon	29005488	29005635	+
GWHAAZE00000002	exon	29006704	29006813	+
GWHAAZE00000002	exon	29006927	29007076	+
GWHAAZE00000002	exon	29008483	29008638	+
GWHAAZE00000002	exon	29008974	29009090	+
GWHAAZE00000002	exon	29009455	29009652	+
GWHAAZE00000002	exon	29010105	29010251	+
GWHAAZE00000002	five_prime_UTR	28992080	28992269	+
GWHAAZE00000002	CDS	28992270	28992298	+
GWHAAZE00000002	CDS	28992408	28992508	+
GWHAAZE00000002	CDS	28993473	28993585	+
GWHAAZE00000002	CDS	28993822	28993881	+
GWHAAZE00000002	CDS	28994143	28994202	+
GWHAAZE00000002	CDS	28994454	28994701	+
GWHAAZE00000002	CDS	28998589	28998637	+
GWHAAZE00000002	CDS	28998721	28998826	+
GWHAAZE00000002	CDS	29003813	29003862	+
GWHAAZE00000002	CDS	29004081	29004227	+
GWHAAZE00000002	CDS	29005212	29005274	+
GWHAAZE00000002	CDS	29005488	29005635	+
GWHAAZE00000002	CDS	29006704	29006813	+
GWHAAZE00000002	CDS	29006927	29007076	+
GWHAAZE00000002	CDS	29008483	29008638	+
GWHAAZE00000002	CDS	29008974	29009090	+
GWHAAZE00000002	CDS	29009455	29009652	+
GWHAAZE00000002	CDS	29010105	29010251	+

Transcript Sequence
>GWHTAAZE006638 AGCCATGTTTGTTTGTTTGTTTGCACTTTTTCTCACTCTTCTCTTTCTGCATGGCGCTCTATTACTTGGTTCTTTCTCAACAAACTCATAAGAATTAACAATATCTCCCCCCATTCTTCTCTAGAATATTTCATTCTAATTCTCAATCTCAATCTTCTTCCCTTAATTTTCTCTTCAATTCCAAACAATAATGGCCGATGGCTGGAATCCTTATCAGATGCTTGATTTGTACATTCATGATTATATGGTGAAAAACAACATGCCTCACACTGCTGAGATTTTCGCTCGAGAGGCTAATGTTTCTCCTCAACATCGAGTTGCAATTGACGTTCCGGAAGGATTTTTGAACGAATGGTGGTCAATATTCTGGGACATGTATTCCGCTAGGGCACGAGGGAATAACACAGAGGGCATGGCAGAATCCTCGTCTGCAGCCCAAAAAAGGATGGGGGATGAACTACAGAATATCTATCCGACAGAATCATCTTCTATGGCCCAAAAAAGGATGGGGAGTGAACTACAGAATATCTATCTGTTAGAATCCTCTTCTATGGCCCCTAAAAGGATGGGGGATGAACTAGAAAATGTTTTTATGCCAGAAATGAAACGGCAGAGGATTGGGCAATCTCCTTTCAATATTGACATTGGGACGATGCTAGGGCAGCCGACACCATCTATGTTGGATGCAAGAGTGTACGGGGAGGAATATCACAGGGTTCCTCCCATAAATTTACGTTCCAATATGCAGCTTCTTGATTTGGATAGACAGGATCATATAAGGCCATCTGCAAGCAATGCTAGCTATCCAAATATGCAAATTTCTGATAGGCCTCAACAGCGGGATGTCAGAGTTGATAGAGATGGAATTGGCATGGGGATATCTATCCCCACGGATTCAACTGCCCATGGAGTCCCGCCAGGAGCCATTCAAGCCAGACCAACACTTCGAAATGCTGGGAGCAACAACGAGGTTGGTCCTATGCCACTGCCAAGGTGGCCATTAACTCACCAGTTTCAAACATTGACTGCTTATCCTCAATTTGAAGAAAAGCCACGAACACCATTAATGGGAACATCTACTCTTCATGGAGGCCCTAGCTACTTGAGTAATCGTAGGCATCCAGTTCCCGAGTTTCGCGAAAAAGATGCGCGAAATACCAGAAAGACGAAGAGTAAGTCAAACAAGTCAAATGCACCAGGTGGAGAAAGTGCTTTGGTTGCTACCAATGCCGAAGTGGATAAACAAGTGGATGAAAACGTGGAGTCTTATTTGTCTCACAATGAAGACAATGCTGATGTTACGAGCAATACCTTCAGTACTTTGCAACCAAGTTCGTTAAATTGTAAGAAAAATGAACTCAAAGGCTTCTCTTTTAAGGAGGTTGGCAGCATACACCCAAGCACTAGCAAGGTTCTGTGCTGCCATTTTTCGTCAGATGGGAAGTTTTTAGTGAGTGCCGGGCATGAGAAGAAGGTCTTGATTTGGAACCTGGATCTTTTTCAACCGGCTAAAACCGCTGAAGAGCACTCTCATATCATCACAGATGTTCGATTTAGACCAAACTCAACCTTATTTGCAACTTCTTCTTTTGATAGAACTGTGCAAATATGGGATGCCTCCAGATCGAGCAAATCTCTGCTGAAGTTTGTTGGGCATGGGGAGCAAGTGATGTCATTGGATTTTCACCCAAGAAAGAGTGATCTTCTCTGCTCTTGTGATAGCAATGACGAGATCCGACTATGGAATGTCAACCAATCTGCTTGCACTAGCGTTTTTAAGGGAGCTAGCAGGCAAGTAAGGTTCCAGCCTCAAGTTGGGAACCTTTTGGCTGCTGCTTCAGGGAGTGCAATAAGCTTGATAGATGTCGAGACTAAATGTGTCCTACACAAATTGGAGGGACATAGTAAAGACATTCGCTCAATCTGCTGGGATAAGAGTGGGAATTATGTTGCATCTGTTAGTGAAGACAGCGCTCGGGTGTGGTCTGCCTCAGGTGGAAAGTGCATGCACGTATTGAATTCCAATGGCAACAAGTTTGGGTCGTGTGCTTTTCATCCCGGATATTCTCTGCTGTTGGTTATTGGTTCTTACCAGTCACTTGTATTGTGGAATTCGACGAAGAACAATGAAACAATTACAGTTAACGCCCATGATGGGATAATTGCTTCCCTCGCTGATTCTCCACGGACGGAAATGATTGCTTCTGCTAGTCACGACCAATGGGTGAAGCTCTGGAAATGA

Network for GWHGAAZE006630

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08513.12	LisH	9	35	2.50E-08
PF00400.33	WD40	402	433	0.0018
PF00400.33	WD40	442	475	2.70E-05
PF00400.33	WD40	483	519	0.11
PF00400.33	WD40	564	599	4.50E-05
PF00400.33	WD40	649	683	0.15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.284
	SRR3591706	second leaf	1.180
	SRR3591707	mature leaf	1.080
	SRR3591708	Shoot apex	0.232
	SRR3591709	Stem	0.047
	SRR3591710	White floral bud	2.793
	SRR3591711	White flower	1.187
	SRR3591712	Green floral bud	5.173
	SRR3591713	Yellow flower	3.005
SRP173429	SRR8316895	Juvenile bud stage	1.892
	SRR8316896	Juvenile bud stage	3.820
	SRR8316897	Juvenile bud stage	2.600
	SRR8316894	Third green stage	1.739
	SRR8316900	Third green stage	5.619
	SRR8316901	Third green stage	4.389
	SRR8316898	Complete white stage	0.623
	SRR8316899	Complete white stage	6.391
	SRR8316903	Complete white stage	1.489
	SRR8316902	Silver flowering stage	0.497
	SRR8316904	Silver flowering stage	0.869
	SRR8316905	Silver flowering stage	0.605
	SRR8316906	Gold flowering stage	0.764
	SRR8316907	Gold flowering stage	0.916
	SRR8316908	Gold flowering stage	2.037
SRP132670	SRR6706286	Control	4.841
	SRR6706287	Light intensity 50%	4.774
	SRR6706288	Light intensity 20%	5.023
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.438
	CNS0095593	Slightly white alabastrum(diploid) 2	3.345
	CNS0095594	Slightly white alabastrum(diploid) 3	1.914
	CNS0095595	Whole white alabastrum(diploid) 2	2.430
	CNS0095596	Whole white alabastrum(diploid) 3	3.909
	CNS0095597	Whole white alabastrum(diploid) 4	3.432
	CNS0095598	Silvery flower (diploied) 1	1.322
	CNS0095599	Silvery flower (diploied) 2	1.098
	CNS0095600	Silvery flower (diploied) 3	1.354
	CNS0095601	Golden flower (diploid) 1	1.114
	CNS0095602	Golden flower (diploid) 2	0.844
	CNS0095603	Golden flower (diploid) 3	0.919
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.337
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.715
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.297
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.927
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.946
	CNS0095610	Silvery flower (tetraploid) 1	0.390
	CNS0095611	Silvery flower (tetraploid) 2	0.653
	CNS0095612	Silvery flower (tetraploid) 3	0.170
	CNS0095613	Golden flower (tetraploid) 1	0.068
	CNS0095614	Golden flower (tetraploid) 2	0.207
	CNS0095615	Golden flower (tetraploid) 3	0.106
CRA001975	CRR073297	Stem 1	6.025
	CRR073298	Stem 2	4.384
	CRR073299	Stem 3	3.319
	CRR073300	Leaf 1	9.954
	CRR073301	Leaf 2	9.302
	CRR073302	Leaf 3	6.808
	CRR073303	Juvenile bud 1	9.076
	CRR073304	Juvenile bud 2	4.894
	CRR073305	Juvenile bud 3	6.467
	CRR073306	Third green 1	0.624
	CRR073307	Third green 2	0.542
	CRR073308	Third green 3	0.728
	CRR073309	Second white 1	0.388
	CRR073310	Second white 2	0.212
	CRR073311	Second white 3	0.496
	CRR073312	Silver flowering 1	0.135
	CRR073313	Silver flowering 2	0.363
	CRR073314	Silver flowering 3	0.216
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.037
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.171
	CRR073319	Tawny withering 2	0.407
	CRR073320	Tawny withering 3	0.344