Detail information of GWHGAAZE006631


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009789007.14.8046E-138PREDICTED: 30S ribosomal protein S5, chloroplastic [Nicotiana sylvestris]
Swissprottr|P93014|RR5_ARATH2E-13130S ribosomal protein S5, chloroplastic (Precursor)
trEMBLtr|M1CWN2|M1CWN2_SOLTU3E-137Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076389}
TAIR10AT2G33800.15E-77Ribosomal protein S5 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2901720729020127-
GWHAAZE00000002mRNA2901720729020127-
GWHAAZE00000002exon2901720729017456-
GWHAAZE00000002exon2901964029020127-
GWHAAZE00000002CDS2901964029020127-
GWHAAZE00000002CDS2901720729017456-
Transcript Sequence

Network for GWHGAAZE006631

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00333.21Ribosomal_S5891535.50E-25
PF03719.16Ribosomal_S5_C1662361.10E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02988RP-S5, MRPS5, rpsE Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.136
SRR3591706second leaf152.375
SRR3591707mature leaf111.195
SRR3591708Shoot apex177.480
SRR3591709Stem34.581
SRR3591710White floral bud52.009
SRR3591711White flower63.552
SRR3591712Green floral bud70.712
SRR3591713Yellow flower65.596
SRP173429 SRR8316895Juvenile bud stage 64.748
SRR8316896Juvenile bud stage 71.162
SRR8316897Juvenile bud stage 39.462
SRR8316894Third green stage 24.334
SRR8316900Third green stage 87.842
SRR8316901Third green stage 82.385
SRR8316898Complete white stage 18.132
SRR8316899Complete white stage 58.801
SRR8316903Complete white stage 28.932
SRR8316902Silver flowering stage21.888
SRR8316904Silver flowering stage26.551
SRR8316905Silver flowering stage19.056
SRR8316906Gold flowering stage 48.504
SRR8316907Gold flowering stage 51.891
SRR8316908Gold flowering stage 45.684
SRP132670SRR6706286Control73.141
SRR6706287Light intensity 50%70.094
SRR6706288Light intensity 20%76.900
CNP0000432CNS0095592Slightly white alabastrum(diploid) 165.615
CNS0095593Slightly white alabastrum(diploid) 256.350
CNS0095594Slightly white alabastrum(diploid) 347.155
CNS0095595Whole white alabastrum(diploid) 247.973
CNS0095596Whole white alabastrum(diploid) 349.038
CNS0095597Whole white alabastrum(diploid) 441.117
CNS0095598Silvery flower (diploied) 174.288
CNS0095599Silvery flower (diploied) 273.619
CNS0095600Silvery flower (diploied) 359.029
CNS0095601Golden flower (diploid) 168.070
CNS0095602Golden flower (diploid) 258.855
CNS0095603Golden flower (diploid) 350.351
CNS0095604Slightly white alabastrum(tetraploid) 164.486
CNS0095605Slightly white alabastrum(tetraploid) 268.391
CNS0095606Slightly white alabastrum(tetraploid) 397.159
CNS0095607Whole white alabastrum(tetraploid) 137.147
CNS0095608Whole white alabastrum(tetraploid) 243.134
CNS0095609Whole white alabastrum(tetraploid) 379.554
CNS0095610Silvery flower (tetraploid) 166.355
CNS0095611Silvery flower (tetraploid) 268.322
CNS0095612Silvery flower (tetraploid) 354.346
CNS0095613Golden flower (tetraploid) 148.678
CNS0095614Golden flower (tetraploid) 262.387
CNS0095615Golden flower (tetraploid) 353.262
CRA001975CRR073297Stem 1124.751
CRR073298Stem 2117.177
CRR073299Stem 3151.183
CRR073300Leaf 178.837
CRR073301Leaf 288.589
CRR073302Leaf 396.919
CRR073303Juvenile bud 186.477
CRR073304Juvenile bud 277.856
CRR073305Juvenile bud 395.978
CRR073306Third green 139.958
CRR073307Third green 223.168
CRR073308Third green 333.376
CRR073309Second white 159.871
CRR073310Second white 227.376
CRR073311Second white 330.895
CRR073312Silver flowering 138.356
CRR073313Silver flowering 238.473
CRR073314Silver flowering 330.649
CRR073315Gold flowering 1221.498
CRR073316Gold flowering 2237.868
CRR073317Gold flowering 3246.630
CRR073318Tawny withering 155.446
CRR073319Tawny withering 258.374
CRR073320Tawny withering 364.457