Detail information of GWHGAAZE006634


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009763061.11.26138E-16PREDICTED: squamosa promoter-binding protein 1-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q38741|SBP1_ANTMA1E-18Squamosa promoter-binding protein 1
trEMBLtr|Q0PY35|Q0PY35_SOLLC8E-19Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g077920.2.1}
TAIR10AT1G20980.10.00000002squamosa promoter binding protein-like 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2907858229078923+
GWHAAZE00000002mRNA2907858229078923+
GWHAAZE00000002exon2907858229078923+
GWHAAZE00000002CDS2907858229078923+
Transcript Sequence

Network for GWHGAAZE006634

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.15SBP69981.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf60.080
SRR3591706second leaf134.767
SRR3591707mature leaf103.124
SRR3591708Shoot apex73.780
SRR3591709Stem51.338
SRR3591710White floral bud216.204
SRR3591711White flower140.149
SRR3591712Green floral bud175.329
SRR3591713Yellow flower73.884
SRP173429 SRR8316895Juvenile bud stage 181.557
SRR8316896Juvenile bud stage 149.304
SRR8316897Juvenile bud stage 125.055
SRR8316894Third green stage 98.490
SRR8316900Third green stage 242.741
SRR8316901Third green stage 207.407
SRR8316898Complete white stage 49.482
SRR8316899Complete white stage 197.931
SRR8316903Complete white stage 99.838
SRR8316902Silver flowering stage52.741
SRR8316904Silver flowering stage77.051
SRR8316905Silver flowering stage57.420
SRR8316906Gold flowering stage 69.150
SRR8316907Gold flowering stage 120.976
SRR8316908Gold flowering stage 112.083
SRP132670SRR6706286Control332.637
SRR6706287Light intensity 50%353.709
SRR6706288Light intensity 20%350.091
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1321.007
CNS0095593Slightly white alabastrum(diploid) 2463.287
CNS0095594Slightly white alabastrum(diploid) 3338.041
CNS0095595Whole white alabastrum(diploid) 2302.946
CNS0095596Whole white alabastrum(diploid) 3312.924
CNS0095597Whole white alabastrum(diploid) 4276.904
CNS0095598Silvery flower (diploied) 1161.816
CNS0095599Silvery flower (diploied) 2130.588
CNS0095600Silvery flower (diploied) 362.193
CNS0095601Golden flower (diploid) 199.889
CNS0095602Golden flower (diploid) 246.985
CNS0095603Golden flower (diploid) 350.039
CNS0095604Slightly white alabastrum(tetraploid) 1206.175
CNS0095605Slightly white alabastrum(tetraploid) 2226.324
CNS0095606Slightly white alabastrum(tetraploid) 3339.245
CNS0095607Whole white alabastrum(tetraploid) 1157.738
CNS0095608Whole white alabastrum(tetraploid) 2168.460
CNS0095609Whole white alabastrum(tetraploid) 3147.530
CNS0095610Silvery flower (tetraploid) 1105.691
CNS0095611Silvery flower (tetraploid) 252.372
CNS0095612Silvery flower (tetraploid) 352.384
CNS0095613Golden flower (tetraploid) 131.522
CNS0095614Golden flower (tetraploid) 287.315
CNS0095615Golden flower (tetraploid) 332.003
CRA001975CRR073297Stem 1207.287
CRR073298Stem 2206.240
CRR073299Stem 3186.603
CRR073300Leaf 1166.158
CRR073301Leaf 2202.505
CRR073302Leaf 3158.421
CRR073303Juvenile bud 1122.683
CRR073304Juvenile bud 243.359
CRR073305Juvenile bud 3102.066
CRR073306Third green 1177.992
CRR073307Third green 2211.042
CRR073308Third green 3183.272
CRR073309Second white 141.126
CRR073310Second white 243.756
CRR073311Second white 322.495
CRR073312Silver flowering 19.217
CRR073313Silver flowering 28.355
CRR073314Silver flowering 311.804
CRR073315Gold flowering 118.016
CRR073316Gold flowering 221.937
CRR073317Gold flowering 315.926
CRR073318Tawny withering 128.975
CRR073319Tawny withering 227.985
CRR073320Tawny withering 328.650