Gene detail

Detail information of GWHGAAZE006645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006449415.1	4.007E-143	hypothetical protein CICLE_v10015883mg [Citrus clementina]
Swissprot	tr\|Q9LX29\|ACR4L_ARATH	6E-53	Serine/threonine-protein kinase-like protein ACR4 (Precursor)
trEMBL	tr\|V4UET4\|V4UET4_9ROSI	1E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESR62655.1}
TAIR10	AT5G46080.1	3E-84	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29328098	29328964	+
GWHAAZE00000002	mRNA	29328098	29328964	+
GWHAAZE00000002	exon	29328098	29328964	+
GWHAAZE00000002	CDS	29328098	29328964	+

Transcript Sequence
>GWHTAAZE006653 ATGCATTATGCATGCTCGTACTCGTTAACAGATATTGATGCAGCCACCGACGGCTTTAACCACCTGAGAATAATTGGAAAAGGCAGGCTGGGAACTGTATATGTGGCATTGATGGCAAGAGGTGACTTTGTGGCAGTAAAACGGATTCATTCCCGTCTAGTTCTGAGCAATGCTAGTTTTGGGTTCTCGACGAAAGTTAAATCCCTCTCCTTAGCTCGCCACCCCAATGTAGTGTCCATATTAGGATTTTCGGAGGCTCCCGGAGAGAGAATTATCGTGACAGAATATGTTGGTACGATGAGCTTGGATTTTTATTTACATCAAGCCTTTGATGATGTGTCATTTTTGGATTGGGGCCGGCGGTTGAAGGTGGCGGCTGGGGTGGCCCGAGGGATTGAATACTTGCATGAGGTGATGGTACCACATGTAGTGCATGGTTGCATTAAGCCTTCAAATATTTTGATAGATGAGAAGTTTTGTGCTAAGGTTTGTGATTATGGGCTATCTACTTTGGCATCCCAAGAGAGGGGAGGCCTAGTGGGCTATGTTGATGAAGAGTATTGGGTTGATAGAAAAGGCGGGTCTAAAGAAACTGATATGTACGGATTAGGGGTGGTTTTGTTGGAGCTTTTGAGTGGTAGAACAAGTGAAGGGGGGGCAATTGTTAGGTGGGCTTTACCTTTGATTAAAGAATTGAAGTTTGGTGAGCTTTTGGATCCAAGACTTGTCATGCCCTCCAATATGAAGTCTATTGTTAGATTGGCTAAAGTTGCTTTAGCTTGTGTTGGTAATTCTAGGAAATATAGGCCTTCCATTGTTAAAGTGACAACTATTTTGAACAATTTGGAGGGGGACAATGTACGGTGA

Network for GWHGAAZE006645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	20	215	8.10E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.108
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.023
	SRR3591710	White floral bud	2.859
	SRR3591711	White flower	3.957
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	25.803
SRP173429	SRR8316895	Juvenile bud stage	0.166
	SRR8316896	Juvenile bud stage	0.038
	SRR8316897	Juvenile bud stage	0.062
	SRR8316894	Third green stage	0.023
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.271
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.382
	SRR8316902	Silver flowering stage	0.468
	SRR8316904	Silver flowering stage	0.944
	SRR8316905	Silver flowering stage	0.315
	SRR8316906	Gold flowering stage	4.766
	SRR8316907	Gold flowering stage	5.549
	SRR8316908	Gold flowering stage	6.652
SRP132670	SRR6706286	Control	0.059
	SRR6706287	Light intensity 50%	0.059
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.262
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.037
	CNS0095598	Silvery flower (diploied) 1	0.094
	CNS0095599	Silvery flower (diploied) 2	1.022
	CNS0095600	Silvery flower (diploied) 3	0.531
	CNS0095601	Golden flower (diploid) 1	0.250
	CNS0095602	Golden flower (diploid) 2	2.984
	CNS0095603	Golden flower (diploid) 3	2.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.093
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.184
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	1.771
	CNS0095611	Silvery flower (tetraploid) 2	0.902
	CNS0095612	Silvery flower (tetraploid) 3	6.445
	CNS0095613	Golden flower (tetraploid) 1	20.094
	CNS0095614	Golden flower (tetraploid) 2	10.253
	CNS0095615	Golden flower (tetraploid) 3	13.367
CRA001975	CRR073297	Stem 1	1.158
	CRR073298	Stem 2	0.374
	CRR073299	Stem 3	0.465
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.003
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	2.301
	CRR073307	Third green 2	3.575
	CRR073308	Third green 3	2.855
	CRR073309	Second white 1	3.924
	CRR073310	Second white 2	6.256
	CRR073311	Second white 3	13.166
	CRR073312	Silver flowering 1	31.793
	CRR073313	Silver flowering 2	30.509
	CRR073314	Silver flowering 3	28.737
	CRR073315	Gold flowering 1	0.079
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.254
	CRR073318	Tawny withering 1	2.904
	CRR073319	Tawny withering 2	0.223
	CRR073320	Tawny withering 3	4.884