Detail information of GWHGAAZE006662


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002305755.20pyruvate decarboxylase family protein [Populus trichocarpa]
Swissprottr|P51850|PDC1_PEA0Pyruvate decarboxylase 1
trEMBLtr|B9H2K8|B9H2K8_POPTR0Pyruvate decarboxylase family protein {ECO:0000313|EMBL:EEE86266.2}
TAIR10AT5G01320.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2960074129608862+
GWHAAZE00000002mRNA2960074129608862+
GWHAAZE00000002exon2960074129601205+
GWHAAZE00000002exon2960413529604298+
GWHAAZE00000002exon2960498929605550+
GWHAAZE00000002exon2960711329607201+
GWHAAZE00000002exon2960734829607465+
GWHAAZE00000002exon2960792629608114+
GWHAAZE00000002exon2960869229608862+
GWHAAZE00000002CDS2960074129601205+
GWHAAZE00000002CDS2960413529604298+
GWHAAZE00000002CDS2960498929605550+
GWHAAZE00000002CDS2960711329607201+
GWHAAZE00000002CDS2960734829607465+
GWHAAZE00000002CDS2960792629608114+
GWHAAZE00000002CDS2960869229608862+
Transcript Sequence

Network for GWHGAAZE006662

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02776.19TPP_enzyme_N241919.90E-36
PF00205.23TPP_enzyme_M2213361.60E-22
PF02775.22TPP_enzyme_C4315568.90E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01568PDC, pdc Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycolysis / Gluconeogenesismap00010

Gene Ontology

GO term OntologyName
GO:0016831molecular_functioncarboxy-lyase activity
GO:0030976molecular_functionthiamine pyrophosphate binding
GO:0003824molecular_functioncatalytic activity
GO:0000287molecular_functionmagnesium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf54.557
SRR3591706second leaf16.861
SRR3591707mature leaf20.971
SRR3591708Shoot apex23.517
SRR3591709Stem121.932
SRR3591710White floral bud37.263
SRR3591711White flower51.243
SRR3591712Green floral bud21.483
SRR3591713Yellow flower36.053
SRP173429 SRR8316895Juvenile bud stage 21.428
SRR8316896Juvenile bud stage 27.877
SRR8316897Juvenile bud stage 15.861
SRR8316894Third green stage 15.497
SRR8316900Third green stage 55.179
SRR8316901Third green stage 46.715
SRR8316898Complete white stage 30.372
SRR8316899Complete white stage 74.631
SRR8316903Complete white stage 41.646
SRR8316902Silver flowering stage19.478
SRR8316904Silver flowering stage28.337
SRR8316905Silver flowering stage14.345
SRR8316906Gold flowering stage 50.866
SRR8316907Gold flowering stage 48.284
SRR8316908Gold flowering stage 55.538
SRP132670SRR6706286Control73.650
SRR6706287Light intensity 50%67.550
SRR6706288Light intensity 20%71.904
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.289
CNS0095593Slightly white alabastrum(diploid) 227.769
CNS0095594Slightly white alabastrum(diploid) 322.639
CNS0095595Whole white alabastrum(diploid) 227.819
CNS0095596Whole white alabastrum(diploid) 326.011
CNS0095597Whole white alabastrum(diploid) 422.086
CNS0095598Silvery flower (diploied) 161.964
CNS0095599Silvery flower (diploied) 262.423
CNS0095600Silvery flower (diploied) 377.412
CNS0095601Golden flower (diploid) 147.721
CNS0095602Golden flower (diploid) 279.269
CNS0095603Golden flower (diploid) 379.876
CNS0095604Slightly white alabastrum(tetraploid) 148.261
CNS0095605Slightly white alabastrum(tetraploid) 237.158
CNS0095606Slightly white alabastrum(tetraploid) 397.135
CNS0095607Whole white alabastrum(tetraploid) 128.488
CNS0095608Whole white alabastrum(tetraploid) 226.183
CNS0095609Whole white alabastrum(tetraploid) 372.183
CNS0095610Silvery flower (tetraploid) 171.518
CNS0095611Silvery flower (tetraploid) 282.883
CNS0095612Silvery flower (tetraploid) 370.276
CNS0095613Golden flower (tetraploid) 138.759
CNS0095614Golden flower (tetraploid) 270.295
CNS0095615Golden flower (tetraploid) 329.151
CRA001975CRR073297Stem 143.054
CRR073298Stem 245.089
CRR073299Stem 346.749
CRR073300Leaf 166.700
CRR073301Leaf 268.345
CRR073302Leaf 366.038
CRR073303Juvenile bud 187.441
CRR073304Juvenile bud 259.666
CRR073305Juvenile bud 399.673
CRR073306Third green 125.533
CRR073307Third green 228.083
CRR073308Third green 328.897
CRR073309Second white 136.931
CRR073310Second white 226.184
CRR073311Second white 317.698
CRR073312Silver flowering 120.243
CRR073313Silver flowering 223.946
CRR073314Silver flowering 324.215
CRR073315Gold flowering 135.011
CRR073316Gold flowering 247.842
CRR073317Gold flowering 342.550
CRR073318Tawny withering 1178.648
CRR073319Tawny withering 290.008
CRR073320Tawny withering 3233.570