Gene detail

Detail information of GWHGAAZE006664

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096421.1	0	PREDICTED: GDSL esterase/lipase At5g45910 [Sesamum indicum]
Swissprot	tr\|Q9FJ45\|GDL83_ARATH	2E-123	GDSL esterase/lipase At5g45910 (Precursor)
trEMBL	tr\|A0A067JE78\|A0A067JE78_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP21068.1}
TAIR10	AT5G45910.1	3E-88	GDSL-like Lipase/Acylhydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29689072	29691642	+
GWHAAZE00000002	mRNA	29689072	29691642	+
GWHAAZE00000002	exon	29689072	29689300	+
GWHAAZE00000002	exon	29689739	29689915	+
GWHAAZE00000002	exon	29690095	29690243	+
GWHAAZE00000002	exon	29690469	29690742	+
GWHAAZE00000002	exon	29691434	29691642	+
GWHAAZE00000002	CDS	29689072	29689300	+
GWHAAZE00000002	CDS	29689739	29689915	+
GWHAAZE00000002	CDS	29690095	29690243	+
GWHAAZE00000002	CDS	29690469	29690742	+
GWHAAZE00000002	CDS	29691434	29691642	+

Transcript Sequence
>GWHTAAZE006672 ATGAGACCACTTCTCTTCCTTGCTTGCATTTTAGTTTGCAAAGTTTCAGCTACTCCTCTAAGATATGACTCTATTTTCAGCTTTGGTGACTCTCTTGCAGACACAGGAAATTTCCTTCTCTCTGGCGCCCTCGCTTTTCCAGTCATTGGAAAGTTCCCGTATGGCGAGACTTTCTTTAACCGCCCAACTGGCCGGTGCTCCAATGGTCGTCTAGTGGTTGATTTCATTGCTGAGGCATGTGGGTTACCATATCTACCACCATATCTAGCACTTGCCAAAGGGGAAAAGTTGCAACATGGTGTGAATTTTGCTGTGGCTGGAGCTACCGCACTCGATGCCAAGTTTTTCTATGACCAAAAAATTGGACAAATTCTGTGGACTAATGATTCTTTAAGTGTCCAGCTGGAATGTGATAACTACTTCAAGAGGTCTTTATTTCTGATGGGAGAGATAGGTGGAAATGACTACAATTACCCCTTCTTTGTTGGTGGCACCATTAGTCAACTCAAAGCTATGGTACCTCTAGTTGTTCAAACAATTGTTGCAGCCACCAGTGCTGTGATAGAGGAAGGTGCGGTGAATTTGATGGTGCCAGGGAATTTTCCGATTGGCTGCTCCGCGGTGTACTTAACACTGTTTCAAACACCCAACAAATCAGCATATGATGGAAATGGATGTTTGAAAATATATAATGCTTTCTCTAAGTACCATAATTCTCAGCTTAAGCTTGCTCTGGAGAAACTGAGACAAAAATATACACATGCAAAGATAATTTATGCTGATTATTATGGTGCAGCTAAGCCATTATTTCATGCCCCAAAACATCTAGGATTTGCAAATGGGGGTTTAATTGCCTGCTGTGGAGGGGGTGGACCCTACAATTTCAATAACTCAGCAAGGTGTGGCCATATGGGTTCCAAAGCATGCGTGGACCCCTCAACTTATGCAAATTGGGATGGTGTGCACTTAACAGATAGAGCTTATGAGCACATTGCCAAGGGCTTGATCGATGGCCCTTTTACTTCTCCATCTCTCTAA

Network for GWHGAAZE006664

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0091

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00657.23	Lipase_GDSL	25	333	3.10E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.911
	SRR3591706	second leaf	176.234
	SRR3591707	mature leaf	2.277
	SRR3591708	Shoot apex	87.137
	SRR3591709	Stem	4.317
	SRR3591710	White floral bud	6.998
	SRR3591711	White flower	3.485
	SRR3591712	Green floral bud	27.615
	SRR3591713	Yellow flower	0.111
SRP173429	SRR8316895	Juvenile bud stage	33.860
	SRR8316896	Juvenile bud stage	41.359
	SRR8316897	Juvenile bud stage	19.339
	SRR8316894	Third green stage	15.826
	SRR8316900	Third green stage	19.748
	SRR8316901	Third green stage	17.526
	SRR8316898	Complete white stage	0.636
	SRR8316899	Complete white stage	14.970
	SRR8316903	Complete white stage	1.514
	SRR8316902	Silver flowering stage	0.405
	SRR8316904	Silver flowering stage	0.232
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.134
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	18.879
	SRR6706287	Light intensity 50%	25.493
	SRR6706288	Light intensity 20%	33.583
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.418
	CNS0095593	Slightly white alabastrum(diploid) 2	13.638
	CNS0095594	Slightly white alabastrum(diploid) 3	12.654
	CNS0095595	Whole white alabastrum(diploid) 2	7.166
	CNS0095596	Whole white alabastrum(diploid) 3	2.403
	CNS0095597	Whole white alabastrum(diploid) 4	4.235
	CNS0095598	Silvery flower (diploied) 1	12.362
	CNS0095599	Silvery flower (diploied) 2	6.168
	CNS0095600	Silvery flower (diploied) 3	1.353
	CNS0095601	Golden flower (diploid) 1	2.217
	CNS0095602	Golden flower (diploid) 2	4.148
	CNS0095603	Golden flower (diploid) 3	1.621
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.452
	CNS0095606	Slightly white alabastrum(tetraploid) 3	106.419
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.760
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.357
	CNS0095610	Silvery flower (tetraploid) 1	0.246
	CNS0095611	Silvery flower (tetraploid) 2	0.281
	CNS0095612	Silvery flower (tetraploid) 3	0.365
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.121
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	37.864
	CRR073298	Stem 2	33.467
	CRR073299	Stem 3	22.030
	CRR073300	Leaf 1	25.819
	CRR073301	Leaf 2	28.886
	CRR073302	Leaf 3	34.618
	CRR073303	Juvenile bud 1	16.236
	CRR073304	Juvenile bud 2	0.676
	CRR073305	Juvenile bud 3	13.634
	CRR073306	Third green 1	0.653
	CRR073307	Third green 2	0.120
	CRR073308	Third green 3	0.378
	CRR073309	Second white 1	0.068
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.012
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.095
	CRR073315	Gold flowering 1	14.691
	CRR073316	Gold flowering 2	15.007
	CRR073317	Gold flowering 3	11.202
	CRR073318	Tawny withering 1	0.240
	CRR073319	Tawny withering 2	0.205
	CRR073320	Tawny withering 3	0.000