Gene detail

Detail information of GWHGAAZE006694

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266057.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Vitis vinifera]
Swissprot	tr\|C0LGQ4\|MRH1_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase MRH1 (Precursor)
trEMBL	tr\|A0A068TLK4\|A0A068TLK4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO96809.1}
TAIR10	AT4G18640.1	5E-176	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30262082	30270697	+
GWHAAZE00000002	mRNA	30262082	30270697	+
GWHAAZE00000002	exon	30262082	30262184	+
GWHAAZE00000002	exon	30262299	30262431	+
GWHAAZE00000002	exon	30263051	30263122	+
GWHAAZE00000002	exon	30263298	30263441	+
GWHAAZE00000002	exon	30263537	30263677	+
GWHAAZE00000002	exon	30264140	30264235	+
GWHAAZE00000002	exon	30264400	30264495	+
GWHAAZE00000002	exon	30264730	30264791	+
GWHAAZE00000002	exon	30264898	30265359	+
GWHAAZE00000002	exon	30266090	30266280	+
GWHAAZE00000002	exon	30266569	30266701	+
GWHAAZE00000002	exon	30266936	30267090	+
GWHAAZE00000002	exon	30267609	30267800	+
GWHAAZE00000002	exon	30270227	30270697	+
GWHAAZE00000002	CDS	30262082	30262184	+
GWHAAZE00000002	CDS	30262299	30262431	+
GWHAAZE00000002	CDS	30263051	30263122	+
GWHAAZE00000002	CDS	30263298	30263441	+
GWHAAZE00000002	CDS	30263537	30263677	+
GWHAAZE00000002	CDS	30264140	30264235	+
GWHAAZE00000002	CDS	30264400	30264495	+
GWHAAZE00000002	CDS	30264730	30264791	+
GWHAAZE00000002	CDS	30264898	30265359	+
GWHAAZE00000002	CDS	30266090	30266280	+
GWHAAZE00000002	CDS	30266569	30266701	+
GWHAAZE00000002	CDS	30266936	30267090	+
GWHAAZE00000002	CDS	30267609	30267800	+
GWHAAZE00000002	CDS	30270227	30270487	+
GWHAAZE00000002	three_prime_UTR	30270488	30270697	+

Transcript Sequence
>GWHTAAZE006702 ATGGGAGGTAAATGCAACACTACATGCAGAATCCAGTTATGGTGTTTGGCACTTTTGATTCTTGTTTTGGAAAGTCAAGGGCGTTGTTCATTGAATTCCGAAGGATTGGCCTTGTTGGAATTCCAGGCTGGTGTGGATTTGGATCCATATGGTGCATTTGCAAATTGGAATCCTAATGATTGTGATCCGTGTTTGTGGTCCGGTGTTCAGTGTGTCAATAGTCAAGTGCAAACGCTGGATCTCAATGGGCTTTCTTTGGAAGGAGTATTGTCTCCGGAGCTCAGCCAACTCACTCACTTACAAACTCTTATATTGTTCAAGAACCAATTTTCTGGTACTATTCCTAAAGAGTTTGCGGGGCTAACAAAGCTGGAGGTTTTAGACTTGAGAAATAATAATTTTAGTGGAACTATTCCAGCAGAAGTAGGAGATATGCAGTCACTAAAATTCTTGTTACTTTGTAATAATAAGTTTGAAGGAAGCTTTCCTTCAGAACTTGAGAAGCTTAATTATCTTTTCGAATTGCAATTCGATGAGAACATTTCATCGGGTGTCACTGGAATTGGCTGCTTAAACAGAAAACTAGGACACTGCCTTTGGCAGAATGGTTCAAAACCGCTGAAGAAATCGGAGTCTATAATCATACCAATCAAAGTGACAATTGCTCGTTACCTCAATCTGATGCCACTACTCGTGGAGGATTGCATAGAACCGCTGAAGAAAGCAGATTCTATAATCATACCAATTAAAGGAATGCTTAGTCGTTACCTCACTCGATGTCCATTGTTCAAGTTCGGAAAGGGATCCATGGACGGTCATGCAGATGATTGGTTCAATAATATACCAAGTTTGCCTGAGAGTGATCCACAAATAGTCCCAAATGTATTGAATGAAGTTAAAGTCGTACGCCGTAGACTATATGAAAGGTGGGGTAGCCTCGCACAGCAGACCACTAACGTCCTAGCTCCTCCTGCCAGTAGTGGGGGCGCTCTTGATGATCAAATCATTGCTCTTCCAAGTAGCAGAAGTAGTGGGTCATACCCTGCCGTAAAAGGGCCAATGCAGGCTCCTACTTCCTCTCCTACAACTACCAATGTTCCAGCACAAGGGACTCGTAACACTTCGAATTCCGTGCAACCAGCTGGAGATTCTGATGATATGTGGAAGTATGTAGTAGGGTTTTCGGTTGGTTCTTTCTTGCTCCTATCTCTTGTAGTTGTTTTCTTCGTTTGCCGGTCCAAAGCAGCGAGGAACATAGCTCCTTGGAAGACTGGATTGAGTGGACAACTTCAGAAAGCATTTGTTACAGGTGTACCTAAGCTGAATCGGACTGAGCTAGAAACAGCCTGTGAGGATTTTAGCAACATTATCGATACACAAGATGGTTGCATTCTGTACAAGGGAACACTATCAAGTGGAGTCGAGATTGCTGTTATATCAACAACGATACCTTCTATCAAAGACTGGTCAAAGCGTGCTGAAAAGGCCTTCCAGAAGAAGATTGATGCCCTTTCACGAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAGGAGGATGAGCCTTTTGTTAGGATGATGGTGTTTGAGTATGCTCCAAATGGATCCCTCTTTGAGCATCTACATGTTAAGGATGTTGAACAAATTGACTGGAACGCGAGGATGAGGATTATAATGGGAACAGCTTACTGTCTCCAATACATGCACGGGTTGAACCCGCCGGTCCACCATTCAAATCTGAACTCAAACTCTATCTACTTGACCGACGATTTTGCTGCAAAAATTATAGAGAACAGTTTTTGGGAAGAACTCTCCCGCAAAGGAAAGATATCGGGTGAAACCGAATCGGAGCATTCTGAAACACGATCGATTGCTGGTAGCGAAACAGACATATACAATTTTGCAATTTTGTGCCTTGAGATCATCTCCGGGAAGCTACCCTACTCAGAAGAACAAGGGCCTCTTCACAACTGGGCAAAAGAATACATGAATGACAAGCGAAACTTTGGCTGCATGATCGACCCCTCCTTGAAGTCCTTTGAGAACGAAGAGCTGGTGATTGTGTGCGAGGTAATACAAGAATGCATTCAAGCCGAAGGTAGAAAGAGACCAAACATGACCGAAATCATCACGAAACTGAGGGGAGTGATAGATATCTCACCGGAACATGCAGTCCCGCGACTCTCTCCTCTCTGGTGGGCAGAACTCGAGATTTTATCCGCCGAAGCGCCTTAGCACTCTCTCCTTCTTTCTCTCTCTACCTCTTTGTTTTGATATATATATATATATATATGTTTTGAGTGTGTGTGAATGTAAAAGAGAAGGCTTCCACCCCTTCAACCAATTCTTCCTTTTTCAATACTTGGTATTGAGCTCTGTTTTTGTATATGTTTCTTTGTGATATCACTTTCATTATTCATTTTATTCAATTATATTTTTGGTGTT

Network for GWHGAAZE006694

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	71	1.80E-09
PF13855.7	LRR_8	99	158	3.90E-07
PF07714.18	PK_Tyr_Ser-Thr	484	715	6.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.553
	SRR3591706	second leaf	5.997
	SRR3591707	mature leaf	4.676
	SRR3591708	Shoot apex	6.898
	SRR3591709	Stem	5.845
	SRR3591710	White floral bud	106.694
	SRR3591711	White flower	7.502
	SRR3591712	Green floral bud	98.276
	SRR3591713	Yellow flower	3.601
SRP173429	SRR8316895	Juvenile bud stage	5.429
	SRR8316896	Juvenile bud stage	13.541
	SRR8316897	Juvenile bud stage	8.628
	SRR8316894	Third green stage	7.689
	SRR8316900	Third green stage	43.821
	SRR8316901	Third green stage	42.755
	SRR8316898	Complete white stage	0.320
	SRR8316899	Complete white stage	2.348
	SRR8316903	Complete white stage	0.762
	SRR8316902	Silver flowering stage	1.038
	SRR8316904	Silver flowering stage	2.009
	SRR8316905	Silver flowering stage	0.499
	SRR8316906	Gold flowering stage	0.619
	SRR8316907	Gold flowering stage	0.465
	SRR8316908	Gold flowering stage	0.430
SRP132670	SRR6706286	Control	16.112
	SRR6706287	Light intensity 50%	17.312
	SRR6706288	Light intensity 20%	16.302
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.183
	CNS0095593	Slightly white alabastrum(diploid) 2	31.086
	CNS0095594	Slightly white alabastrum(diploid) 3	36.588
	CNS0095595	Whole white alabastrum(diploid) 2	85.473
	CNS0095596	Whole white alabastrum(diploid) 3	101.113
	CNS0095597	Whole white alabastrum(diploid) 4	120.897
	CNS0095598	Silvery flower (diploied) 1	4.526
	CNS0095599	Silvery flower (diploied) 2	11.199
	CNS0095600	Silvery flower (diploied) 3	3.663
	CNS0095601	Golden flower (diploid) 1	5.504
	CNS0095602	Golden flower (diploid) 2	4.521
	CNS0095603	Golden flower (diploid) 3	4.703
	CNS0095604	Slightly white alabastrum(tetraploid) 1	66.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.917
	CNS0095607	Whole white alabastrum(tetraploid) 1	132.952
	CNS0095608	Whole white alabastrum(tetraploid) 2	150.887
	CNS0095609	Whole white alabastrum(tetraploid) 3	65.859
	CNS0095610	Silvery flower (tetraploid) 1	3.565
	CNS0095611	Silvery flower (tetraploid) 2	7.979
	CNS0095612	Silvery flower (tetraploid) 3	17.767
	CNS0095613	Golden flower (tetraploid) 1	2.738
	CNS0095614	Golden flower (tetraploid) 2	2.058
	CNS0095615	Golden flower (tetraploid) 3	10.988
CRA001975	CRR073297	Stem 1	11.152
	CRR073298	Stem 2	10.850
	CRR073299	Stem 3	6.148
	CRR073300	Leaf 1	53.885
	CRR073301	Leaf 2	33.903
	CRR073302	Leaf 3	14.320
	CRR073303	Juvenile bud 1	40.040
	CRR073304	Juvenile bud 2	21.540
	CRR073305	Juvenile bud 3	6.373
	CRR073306	Third green 1	14.972
	CRR073307	Third green 2	13.996
	CRR073308	Third green 3	15.343
	CRR073309	Second white 1	1.608
	CRR073310	Second white 2	3.262
	CRR073311	Second white 3	3.847
	CRR073312	Silver flowering 1	16.374
	CRR073313	Silver flowering 2	19.578
	CRR073314	Silver flowering 3	8.585
	CRR073315	Gold flowering 1	13.535
	CRR073316	Gold flowering 2	7.065
	CRR073317	Gold flowering 3	5.454
	CRR073318	Tawny withering 1	22.213
	CRR073319	Tawny withering 2	22.238
	CRR073320	Tawny withering 3	19.245