Detail information of GWHGAAZE006698


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008444408.10PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [Cucumis melo]
Swissprottr|Q9C6Z3|ODPB2_ARATH0Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic (Precursor)
trEMBLtr|A0A0A0LUF3|A0A0A0LUF3_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN65530.1}
TAIR10AT1G30120.13E-166pyruvate dehydrogenase E1 beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3032372930324652+
GWHAAZE00000002mRNA3032372930324652+
GWHAAZE00000002exon3032372930324652+
GWHAAZE00000002CDS3032372930324652+
Transcript Sequence

Network for GWHGAAZE006698

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02779.25Transket_pyr11611.40E-44
PF02780.21Transketolase_C1772986.50E-38
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00162PDHB, pdhB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.777
SRR3591706second leaf62.209
SRR3591707mature leaf64.958
SRR3591708Shoot apex59.377
SRR3591709Stem47.425
SRR3591710White floral bud68.118
SRR3591711White flower67.283
SRR3591712Green floral bud82.108
SRR3591713Yellow flower73.934
SRP173429 SRR8316895Juvenile bud stage 58.903
SRR8316896Juvenile bud stage 86.545
SRR8316897Juvenile bud stage 56.460
SRR8316894Third green stage 17.738
SRR8316900Third green stage 70.354
SRR8316901Third green stage 76.864
SRR8316898Complete white stage 32.092
SRR8316899Complete white stage 109.243
SRR8316903Complete white stage 37.234
SRR8316902Silver flowering stage17.988
SRR8316904Silver flowering stage24.079
SRR8316905Silver flowering stage13.015
SRR8316906Gold flowering stage 48.269
SRR8316907Gold flowering stage 45.523
SRR8316908Gold flowering stage 43.499
SRP132670SRR6706286Control64.247
SRR6706287Light intensity 50%66.577
SRR6706288Light intensity 20%76.335
CNP0000432CNS0095592Slightly white alabastrum(diploid) 157.367
CNS0095593Slightly white alabastrum(diploid) 268.817
CNS0095594Slightly white alabastrum(diploid) 370.182
CNS0095595Whole white alabastrum(diploid) 257.470
CNS0095596Whole white alabastrum(diploid) 340.463
CNS0095597Whole white alabastrum(diploid) 450.308
CNS0095598Silvery flower (diploied) 158.485
CNS0095599Silvery flower (diploied) 260.798
CNS0095600Silvery flower (diploied) 376.550
CNS0095601Golden flower (diploid) 155.122
CNS0095602Golden flower (diploid) 286.401
CNS0095603Golden flower (diploid) 383.794
CNS0095604Slightly white alabastrum(tetraploid) 156.744
CNS0095605Slightly white alabastrum(tetraploid) 244.370
CNS0095606Slightly white alabastrum(tetraploid) 389.227
CNS0095607Whole white alabastrum(tetraploid) 137.761
CNS0095608Whole white alabastrum(tetraploid) 234.120
CNS0095609Whole white alabastrum(tetraploid) 383.383
CNS0095610Silvery flower (tetraploid) 175.686
CNS0095611Silvery flower (tetraploid) 285.721
CNS0095612Silvery flower (tetraploid) 364.061
CNS0095613Golden flower (tetraploid) 160.882
CNS0095614Golden flower (tetraploid) 269.601
CNS0095615Golden flower (tetraploid) 382.191
CRA001975CRR073297Stem 183.002
CRR073298Stem 277.850
CRR073299Stem 397.725
CRR073300Leaf 1104.304
CRR073301Leaf 2104.482
CRR073302Leaf 3116.600
CRR073303Juvenile bud 1121.295
CRR073304Juvenile bud 2141.905
CRR073305Juvenile bud 3118.605
CRR073306Third green 161.764
CRR073307Third green 255.287
CRR073308Third green 350.534
CRR073309Second white 186.233
CRR073310Second white 259.515
CRR073311Second white 359.121
CRR073312Silver flowering 181.974
CRR073313Silver flowering 2102.256
CRR073314Silver flowering 369.621
CRR073315Gold flowering 180.014
CRR073316Gold flowering 2109.550
CRR073317Gold flowering 3113.268
CRR073318Tawny withering 173.049
CRR073319Tawny withering 283.783
CRR073320Tawny withering 354.553